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Report for CCDS30541.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30541.1 Public Mus musculus Y Kdm5d 23 108 98 CCDS HistoryNCBI Gene:20592Re-query CCDS DB by CCDS ID:30541.1Re-query CCDS DB by GeneID:20592See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30541.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055032.13 ENSMUSP00000061095.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055032.13Link to Ensembl Protein Viewer:ENSMUSP00000061095.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000055032Re-query CCDS DB by Protein ID:ENSMUSP00000061095
Original member NCBI NM_011419.3 NP_035549.1 Updated not alive Link to Nucleotide Sequence:NM_011419.3Link to Protein Sequence:NP_035549.1Re-query CCDS DB by Nucleotide ID:NM_011419Re-query CCDS DB by Protein ID:NP_035549
Current member NCBI NM_011419.4 NP_035549.1 Accepted alive Link to Nucleotide Sequence:NM_011419.4Link to Protein Sequence:NP_035549.1Re-query CCDS DB by Nucleotide ID:NM_011419Re-query CCDS DB by Protein ID:NP_035549Link to BLAST:NP_035549.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035549.1 1548 Q62240-1 1548 100% 0 0

Chromosomal Locations for CCDS 30541.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome Y (NC_000087.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 897966 898115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 898550 898627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 899428 899550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 899787 899957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 900479 900613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 910448 910586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 910686 910849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 914025 914183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 916641 916760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 916846 917004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 921402 921583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 921674 921836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 927007 927126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 927245 927439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 927710 927891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 927970 928094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 928237 928384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 936876 936972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 937813 938171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 939819 939957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 940599 940778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 940905 941042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 941227 941823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 942231 942312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 942442 942641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 942824 943165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4647 nt):
ATGAAGCCAGGATCTGACGACTTTCTACCGCCGCCTGAGTGCCCTGTGTTTGAGCCCAGTTGGGCGGAAT
TCCGCGATCCTCTTGGCTATATAGCTAAAATCAGACCCATTGCGGAGAAATCAGGCATTTGCAAGATACG
CCCACCTGCGGATTGGCAACCTCCTTTTGCTGTAGAAGTTGATAACTTCAGATTTACTCCTCGAATTCAG
AGGCTAAATGAACTGGAGGCCCAGACCAGAGTAAAACTGAACTATTTGGATCAGATTGCAAAGTTCTGGG
AAATTCAAGGTTCTTCCTTAAAGATACCTAATGTGGAGAGGAAGATCTTGGACCTTTACAGCCTTAATAA
GATTGTGATGGAGGAAGGTGGATATGAAGCAATCTGCAAGGACCGTCGGTGGGCCCGTGTTGCCCAACGC
CTTAATTACCCATCAGGGAAAAACATTGGTTCCCTGCTTCGGTCCCACTACGAACGGATCATTTACCCTT
ATGAAATATTTCAGTCTGGAGCTAATCTTGTGCAATGTAACACAGATCCATTTGACAGTGAAGAAAGAGA
CAAGGAATACAAACCTCATAGCATTCCTCTTAGACAGTCTGTTCAGCCATCAAAATTCAGTTGCTACAGT
AGACGAGGAAAAAGGCTACAGCCTGAGCCAGAACCCACAGAAGAAGACATTGAGAAAAACCCAGAGCTAA
AGAAACTACAGATATATGGGGCAGGCCCCAAGATGATAGGCTTGGGCCTCAAGGCTAAGGAGAAAACTCT
GAGAAAGAAAGATAGCAAACAACCAGATAAAGAAGAAGTGACATGCCCTGCAACTATTGTAGTGAAGGGG
GAAGCCAGTGAGTTTGGAAAGGTGACATCAGCATTTTCAGACAAGAACTTAAATCACAGTTTTGAACCTT
GTATGAAGATGACTATGCAGCTACGGAACAATCACAGCAGTACCCAGTTTATGAATTCATATGTTTGCCG
AATATGCTCTCGTGGGGATGAAGTCGATAAGTTTCTGCTCTGTGATGGCTGCAGTGATAATTACCACATC
TTTTGCCTATTGCCACCGCTTTCTGAAGTCCCCAAGGGAGTATGGAGATGCCCGAAGTGTATCTTAGCAG
AGTGTAAGAGTCCCCCTGAAGCTTTTGGCTTTGAGCAGGCTACACAGGAGTATACTTTGCAGAGTTTTGG
TGAGATGGCTGACTCCTTCAAGGCTGACTACTTCAACATGCCTGTGCATATGGTACCTACAGAAGTTGTG
GAAAAGGAATTCTGGAGGCTGGTGAGCAGCATTGAGGAGGATGTGACAGTTGAATATGGAGCAGACATTC
ACTCCAAAGAATTTGGCAGTGGGTTTCCTGTCAACAATAGCAAATGGGACTTATCTCCTGAAGAAAAGGA
ATATGCTGCTTGTGGTTGGAATCTCAATGTGATGCCAGTGCTGGATCAGTCTGTTCTCTGCCACATCAAT
GCAGACATCTCAGGCATGAAAGTGCCCTGGTTATATGTGGGCATGGTGTTTTCAGCATTTTGTTGGCATA
TTGAGGATCACTGGAGTTATTCCATTAACTACCTGCACTGGGGTGAACCAAAGACCTGGTATGGAGTACC
TTCGCTAGCAGCAGAACACTTAGAGGATGTAATGAAGAGACTTACACCAGAGTTGTTTGACAGCCAACCT
GACCTCCTGCACCAACTTGTCACTCTGATGAATCCTAACACTCTCATGTCACATGGAGTGCCAGTTGTTC
GTACAAACCAGTGTGCAGGGGAATTTGTCATTACTTTTCCCCGTGCTTACCACAGTGGCTTTAACCAAGG
CTATAACTTTGCTGAGGCAGTGAACTTTTGCACTGCCGATTGGCTACCTGTTGGACGCCAGTGTATTGAA
CACTACCGCCGACTCCGGCGCTATTGTGTCTTCTCCCATGAAGAACTTATCTGCAAGATGGCTGCATTTC
CAGAGAAGTTGGATCTAAATCTAGCAGTGGCAGTTCACAAGGAGATGTTCATTATGGTACAGGAGGAGCG
ACGCCTACGAAAGACCTTGTTGGAGAAGGGCATCACGGAAGCTGAGCGAGAGGCTTTTGAGCTACTCCCA
GATGATGAGCGTCAGTGCATCAAGTGTAAGACCACGTGTTTCCTATCAGCCTTGGCCTGTTATGACTGTC
CAGATAGTCTTGTCTGCCTTTCCCATATCAATGATCTGTGCAAGTGCTCAAGGAATCGACAGTACTTACG
GTACAGGTACACATTGGATGAACTGCCTGCTATGCTACAAAAGCTGAAGATTCGAGCTGAGTCATTTGAC
AACTGGGCCAACAAAGTACAAGCAGCCCTAGAGGTGGAGGATGGTCGGAAACGGAGTTTTGAAGAGCTAA
GAGCATTGGAATCTGAGGCTCGTGATAGACGATTTCCTAATAGTGAGCTGCTTCAGCGATTGAAGAAATG
CCTAACTGAAGCAGAGGCTTGTATTTCCCAAGTTCTTGGACTGATCAGTAACTCAGAGGACAGGTTACAA
ACACCGCAAATCACCCTTACTGAACTACAGCTTCTTCTCAAACAGATGGGCACTCTGCCCTGTACCATGC
ATCAGATTGATGAAGTTAAGGATGTTCTTCAACAGGTGGAATCATACCAAATTGAGACCCGTGAGGCTCT
AACTTCACTGCCTTACAGTTTAGAAATACTTCAGTCCCTGATGGAAAAGGGTCAGCAGCTTCGTGTGGAA
GTGCCTGAAGCTCATCAACTTGAAGAGCTGTTGGAGCAGGCACAATGGCTAGATCAAGTGAAGCAGGCCC
TGGCTCCCTCAGGCCAGAGGCACTCTTTGGTTATCATGAAGAAGCTTTTAGTTATGGGAACCAAGGTAGC
CTCCAGCCCTTCTGTGAACAAAGCTCGAGCAGAGTTACAAGAACTGCTGACTATTGCAGAATGTTGGGAG
GAAAAGGCCCATTTTTGCTTAAAAGCTAGCCAAAAGCATTCTCCAGCCACTTTGGAAGTTATAATACGTG
AGGCAGAAAACATCCCTGTCTACCTACCTAACATCCAGTCTCTGAAGGAAGCTCTGACTAAGGCACAGGC
TTGGATTGCTGATGTGAATGAGATTCAAAATGGTGATCACTACCCCTGTTTGGATGATTTGGAGGGCCTT
GTAGCTGTTGGTCGGGATTTACCTGTGGAGCTAGAGGAATTGAGACAGCTGGAGAATCAGGTACTAACAG
CACATTCCTGGAAAGAGAAAGCTTCTAAGACTTTTCTTAAGAAGAATTCTTGCTACACATTGTTGGAGGT
TCTCTGCCCATGTGCAGATGCTGGTTCAGTCAGCACCAAGCGCAGTCGGTGGATTGAAAAGGAGATGGGA
TTATACAAATATGACACAGAATTGCTGGGGCTGTCTGCACAGGACCTCAGGGACCCAGGGTCTGTGATCA
TGGCCTTTAAGGAAGGGGAAGAGAAAGAAAAGGAAGGTATCTTGCACTTACGTCACATCAACTCAGCCAA
GCCCAGTCCAATGTCCTCATCGATGAATGCCTCTGCAACCTCCATCTGTATATGTGGGCAGGTCTGTGCA
GGAGTGGAATCTCTGCAGTGTGATCTTTGTCATGACTGGTTCCATGGACAATGTGTGACTGTACCCCACC
TACTCAGCTCAGTAAGGGCCAGTCATACCTCATCTCAACTGCTAGCTTGGTGGGAATGGGACACCAAGTT
CCTGTGCCCACTGTGCATGCGATCAAGGCGTCCACGCCTGGAGACCATCTTGTCATTGCTGGTAGGACTA
CAGAGACTGTCTGTAAGGCTACCTGAGGGTGAGGCCCTACAGTGCCTCACAGAGAGAGCCATTGGTTGGC
AAGGCCGTGCCAGGCAGGCTCTAGCTTCTGAGGATGTGACTGCTTTGTTGAAACAGCTGGAAAAATCCCG
CCAACAACTACAGGATGAATTGAGACATAAGAAGCCCCCTACCTTGCCTTCAGGCTTTGCCTTTGACTGT
CTCACAGAGAATAGTGGCAAGGATATCCTTAAGGAAGAGGAGGAGTTGGTACTAAATGAAGAAAGGATTA
AAAGTTCTGAGAAGATTGTTCCAAAGGAAAGTTCATGTAAAGGAGATAAGGAACTGCTGCCTTCACTTTT
ATCCCAATTAACTGGCCCAGTACTGGAACTGCCTGAAGCCACCCGGGCACCCCTAGAGGAGCTTATGATG
GAAGGAGATCTACTTGAAGTTACCCTAGATGAGAACTACAGCATTTGGCAGCTGCTGCAGGCTGGGCAGA
ATCCCAATCTAGAGCGCATTCATACACTTCTGGAGCTTGAGAAGCCTGAAAACCCAGGAAATTGGTCAGA
GGAACAGACACCAGAGAGGCGACGGCAGAGGAGGCAAAAGGTGGTTCTGAGTAGAAAGGGTGAGGATTTT
ACTCAAAAAGAGCTAGAATCAAAAAGAGTCAAGAGTTCAAGGATTAAGCCTAAGGAAGAAAAGTTTCAAA
AGCCAATACTTGGGGATAATGTGCTGTACACACACCATACAGAACATACAAACATCTTAAAAGAGCACAT
AAACAGTGTACAAGGAAAGGATCCAAGCCCTTCATCTTCTTTTCCTTCCTTAACACCTTTACTACACCTA
TCTTATTTTCATCAGCAAAAATTATAA

Translation (1548 aa):
MKPGSDDFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNFRFTPRIQ
RLNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERKILDLYSLNKIVMEEGGYEAICKDRRWARVAQR
LNYPSGKNIGSLLRSHYERIIYPYEIFQSGANLVQCNTDPFDSEERDKEYKPHSIPLRQSVQPSKFSCYS
RRGKRLQPEPEPTEEDIEKNPELKKLQIYGAGPKMIGLGLKAKEKTLRKKDSKQPDKEEVTCPATIVVKG
EASEFGKVTSAFSDKNLNHSFEPCMKMTMQLRNNHSSTQFMNSYVCRICSRGDEVDKFLLCDGCSDNYHI
FCLLPPLSEVPKGVWRCPKCILAECKSPPEAFGFEQATQEYTLQSFGEMADSFKADYFNMPVHMVPTEVV
EKEFWRLVSSIEEDVTVEYGADIHSKEFGSGFPVNNSKWDLSPEEKEYAACGWNLNVMPVLDQSVLCHIN
ADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEDVMKRLTPELFDSQP
DLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPVGRQCIE
HYRRLRRYCVFSHEELICKMAAFPEKLDLNLAVAVHKEMFIMVQEERRLRKTLLEKGITEAEREAFELLP
DDERQCIKCKTTCFLSALACYDCPDSLVCLSHINDLCKCSRNRQYLRYRYTLDELPAMLQKLKIRAESFD
NWANKVQAALEVEDGRKRSFEELRALESEARDRRFPNSELLQRLKKCLTEAEACISQVLGLISNSEDRLQ
TPQITLTELQLLLKQMGTLPCTMHQIDEVKDVLQQVESYQIETREALTSLPYSLEILQSLMEKGQQLRVE
VPEAHQLEELLEQAQWLDQVKQALAPSGQRHSLVIMKKLLVMGTKVASSPSVNKARAELQELLTIAECWE
EKAHFCLKASQKHSPATLEVIIREAENIPVYLPNIQSLKEALTKAQAWIADVNEIQNGDHYPCLDDLEGL
VAVGRDLPVELEELRQLENQVLTAHSWKEKASKTFLKKNSCYTLLEVLCPCADAGSVSTKRSRWIEKEMG
LYKYDTELLGLSAQDLRDPGSVIMAFKEGEEKEKEGILHLRHINSAKPSPMSSSMNASATSICICGQVCA
GVESLQCDLCHDWFHGQCVTVPHLLSSVRASHTSSQLLAWWEWDTKFLCPLCMRSRRPRLETILSLLVGL
QRLSVRLPEGEALQCLTERAIGWQGRARQALASEDVTALLKQLEKSRQQLQDELRHKKPPTLPSGFAFDC
LTENSGKDILKEEEELVLNEERIKSSEKIVPKESSCKGDKELLPSLLSQLTGPVLELPEATRAPLEELMM
EGDLLEVTLDENYSIWQLLQAGQNPNLERIHTLLELEKPENPGNWSEEQTPERRRQRRQKVVLSRKGEDF
TQKELESKRVKSSRIKPKEEKFQKPILGDNVLYTHHTEHTNILKEHINSVQGKDPSPSSSFPSLTPLLHL
SYFHQQKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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