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Report for CCDS30578.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30578.1 Public Homo sapiens 1 CA6 24 110 108 CCDS HistoryNCBI Gene:765Re-query CCDS DB by CCDS ID:30578.1Re-query CCDS DB by GeneID:765See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 30578.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377443.7 ENSP00000366662.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377443.7Link to Ensembl Protein Viewer:ENSP00000366662.2Re-query CCDS DB by Nucleotide ID:ENST00000377443Re-query CCDS DB by Protein ID:ENSP00000366662
Original member Current member NCBI NM_001215.4 NP_001206.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001215.4Link to Protein Sequence:NP_001206.2Re-query CCDS DB by Nucleotide ID:NM_001215Re-query CCDS DB by Protein ID:NP_001206Link to BLAST:NP_001206.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001206.2 308 P23280-1 308 100% 0 0

Chromosomal Locations for CCDS 30578.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 8945887 8945965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8949263 8949442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8957137 8957285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8958910 8959002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8962587 8962656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8967659 8967816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8970867 8970981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8974622 8974704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGAGGGCCCTGGTGCTTCTGCTGTCCCTGTTCCTGCTGGGTGGCCAGGCCCAGCATGTGTCTGACTGGA
CCTACTCAGAAGGGGCACTGGACGAAGCGCACTGGCCACAGCACTACCCCGCCTGTGGGGGCCAGAGACA
GTCGCCTATCAACCTACAGAGGACGAAGGTGCGGTACAACCCCTCCTTGAAGGGGCTCAATATGACAGGC
TATGAGACCCAGGCAGGGGAGTTCCCCATGGTCAACAATGGCCACACAGTGCAGATCAGCCTGCCCTCCA
CCATGCGCATGACAGTGGCTGACGGCACTGTATACATAGCCCAGCAGATGCACTTTCACTGGGGAGGTGC
GTCCTCGGAGATCAGCGGCTCTGAGCACACCGTGGACGGGATCAGACATGTGATCGAGATTCACATTGTT
CACTACAATTCTAAATACAAGAGCTATGATATAGCCCAAGATGCGCCGGATGGTTTGGCTGTACTGGCAG
CCTTCGTTGAGGTGAAGAATTACCCTGAAAACACTTATTACAGCAACTTCATTTCTCATCTGGCCAACAT
CAAGTACCCAGGACAAAGAACAACCCTGACTGGCCTTGACGTTCAGGACATGCTGCCCAGGAACCTCCAG
CACTACTACACCTACCATGGCTCACTCACCACGCCTCCCTGCACTGAGAACGTCCACTGGTTTGTGCTGG
CAGATTTTGTCAAGCTCTCCAGGACACAGGTTTGGAAGCTGGAGAATTCCTTACTGGATCACCGCAACAA
GACCATCCACAACGATTACCGCAGGACCCAGCCCCTGAACCACAGAGTGGTGGAATCCAACTTCCCGAAT
CAGGAATACACTCTAGGCTCTGAATTCCAGTTTTACCTACATAAGATTGAGGAAATTCTTGACTACTTAA
GAAGAGCATTGAACTGA

Translation (308 aa):
MRALVLLLSLFLLGGQAQHVSDWTYSEGALDEAHWPQHYPACGGQRQSPINLQRTKVRYNPSLKGLNMTG
YETQAGEFPMVNNGHTVQISLPSTMRMTVADGTVYIAQQMHFHWGGASSEISGSEHTVDGIRHVIEIHIV
HYNSKYKSYDIAQDAPDGLAVLAAFVEVKNYPENTYYSNFISHLANIKYPGQRTTLTGLDVQDMLPRNLQ
HYYTYHGSLTTPPCTENVHWFVLADFVKLSRTQVWKLENSLLDHRNKTIHNDYRRTQPLNHRVVESNFPN
QEYTLGSEFQFYLHKIEEILDYLRRALN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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