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Report for CCDS30806.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30806.1 Public Homo sapiens 1 TAFA3 24 110 108 CCDS HistoryNCBI Gene:284467Re-query CCDS DB by CCDS ID:30806.1Re-query CCDS DB by GeneID:284467See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30806.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369630.7 ENSP00000358644.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369630.7Link to Ensembl Protein Viewer:ENSP00000358644.3Re-query CCDS DB by Nucleotide ID:ENST00000369630Re-query CCDS DB by Protein ID:ENSP00000358644
Original member Current member NCBI NM_001004440.2 NP_001004440.1 Accepted alive Link to Nucleotide Sequence:NM_001004440.2Link to Protein Sequence:NP_001004440.1Re-query CCDS DB by Nucleotide ID:NM_001004440Re-query CCDS DB by Protein ID:NP_001004440Link to BLAST:NP_001004440.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004440.1 169 Q7Z5A8-2 169 100% 0 0

Chromosomal Locations for CCDS 30806.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 112722234 112722348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112723016 112723165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112723945 112724137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112726629 112726680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (510 nt):
ATGAGTGAGAGGGTCGAGCGGAACTGGAGCACGGGCGGCTGGCTGCTGGCACTGTGCCTGGCCTGGCTGT
GGACCCACCTGACCTTGGCTGCCTTGCAGCCTCCCACTGCCACAGTGCTTGTGCAGCAGGGCACCTGCGA
GGTGATTGCGGCTCACCGCTGCTGCAACCGGAACCGCATCGAGGAGCGCTCCCAGACGGTGAAATGCTCC
TGTTTTTCTGGCCAGGTGGCCGGCACCACGCGGGCAAAGCCCTCCTGCGTGGACGACCTGCTCTTGGCTG
CCCACTGTGCTCGTAGAGACCCTAGAGCTGCACTCCGCCTCCTGCTCCCACAGCCTCCATCGTCCTGCAG
AGATGGTGGTGTCAGATGGAGCCCTGCCTGCCGGGGGAGGAGTGTAAGGTGCTCCCGGACCTGTCGGGAT
GGAGCTGCAGCAGTGGACACAAAGTCAAAACCACCAAGGTCACACGATAGCTCTTGGGGGTCACGGCCTG
GACAAGAAAGGCTTGACTGA

Translation (169 aa):
MSERVERNWSTGGWLLALCLAWLWTHLTLAALQPPTATVLVQQGTCEVIAAHRCCNRNRIEERSQTVKCS
CFSGQVAGTTRAKPSCVDDLLLAAHCARRDPRAALRLLLPQPPSSCRDGGVRWSPACRGRSVRCSRTCRD
GAAAVDTKSKPPRSHDSSWGSRPGQERLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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