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Report for CCDS30855.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30855.1 Public Homo sapiens 1 LINGO4 24 110 108 CCDS HistoryNCBI Gene:339398Re-query CCDS DB by CCDS ID:30855.1Re-query CCDS DB by GeneID:339398See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30855.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368820.4 ENSP00000357810.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368820.4Link to Ensembl Protein Viewer:ENSP00000357810.4Re-query CCDS DB by Nucleotide ID:ENST00000368820Re-query CCDS DB by Protein ID:ENSP00000357810
Original member Current member NCBI NM_001004432.4 NP_001004432.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004432.4Link to Protein Sequence:NP_001004432.1Re-query CCDS DB by Nucleotide ID:NM_001004432Re-query CCDS DB by Protein ID:NP_001004432Link to BLAST:NP_001004432.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004432.1 593 Q6UY18 593 100% 0 0

Chromosomal Locations for CCDS 30855.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 151800923 151802704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1782 nt):
ATGGATGCAGCCACAGCTCCAAAGCAAGCCTGGCCCCCATGGCCCCCGCTCCTTTTCCTCCTCCTCCTAC
CTGGAGGGAGCGGTGGCAGCTGCCCTGCTGTGTGTGACTGCACCTCCCAGCCCCAGGCTGTGCTCTGTGG
CCACAGGCAACTGGAGGCTGTACCTGGAGGACTCCCACTGGACACTGAGCTCCTGGACCTGAGTGGGAAC
CGCCTGTGGGGGCTCCAGCAGGGAATGCTCTCCCGCCTGAGCCTGCTCCAGGAATTGGACCTCAGCTACA
ACCAGCTCTCAACCCTTGAGCCTGGGGCCTTCCATGGCCTACAAAGCCTACTCACCCTGAGGCTGCAGGG
CAATCGGCTCAGAATCATGGGGCCTGGGGTCTTCTCAGGCCTCTCTGCTCTGACCCTGCTGGACCTCCGC
CTCAACCAGATTGTTCTCTTCCTAGATGGAGCTTTTGGGGAGCTAGGCAGCCTCCAGAAGCTGGAGGTTG
GGGACAACCACCTGGTATTTGTGGCTCCGGGGGCCTTTGCAGGGCTAGCCAAGTTGAGCACCCTCACCCT
GGAGCGCTGCAACCTCAGCACAGTGCCTGGCCTAGCCCTTGCCCGTCTCCCGGCACTAGTGGCCCTAAGG
CTTAGAGAACTGGATATTGGGAGGCTGCCAGCTGGGGCCCTGCGGGGGCTGGGGCAGCTCAAGGAGCTGG
AGATCCACCTCTGGCCATCTCTGGAGGCTCTGGACCCTGGGAGCCTGGTTGGGCTCAATCTCAGCAGCCT
GGCCATCACTCGCTGCAATCTGAGCTCGGTGCCCTTCCAAGCACTGTACCACCTCAGCTTCCTCAGGGTC
CTGGATCTGTCCCAGAATCCCATCTCAGCCATCCCAGCCCGAAGGCTCAGCCCCCTGGTGCGGCTCCAGG
AGCTACGCCTGTCAGGGGCATGCCTCACCTCCATTGCTGCCCATGCCTTCCATGGCTTGACTGCCTTCCA
CCTCCTGGATGTGGCAGATAACGCCCTTCAGACACTAGAGGAAACAGCTTTCCCTTCTCCAGACAAACTG
GTCACCTTGAGGCTGTCTGGCAACCCCCTAACCTGTGACTGCCGCCTCCTCTGGCTGCTCCGGCTCCGCC
GCCACCTGGACTTTGGCATGTCCCCCCCTGCCTGTGCTGGCCCCCATCATGTCCAGGGGAAGAGCCTGAA
GGAGTTTTCAGACATCCTGCCTCCAGGGCACTTCACCTGCAAACCAGCCCTGATCCGAAAGTCGGGGCCT
CGATGGGTCATTGCAGAGGAGGGCGGGCATGCGGTTTTCTCCTGCTCTGGAGATGGAGACCCAGCCCCCA
CTGTCTCCTGGATGAGGCCTCATGGGGCTTGGCTGGGCAGGGCTGGGAGAGTAAGGGTCCTAGAGGATGG
GACACTGGAGATCCGCTCAGTGCAGCTACGGGACAGAGGGGCCTATGTCTGTGTGGTTAGCAATGTCGCT
GGGAATGACTCCCTGAGGACCTGGCTGGAAGTCATCCAGGTGGAACCACCAAACGGCACACTTTCTGACC
CCAACATCACCGTGCCAGGGATCCCAGGGCCTTTTTTTCTGGATAGCAGAGGTGTGGCCATGGTGCTGGC
AGTCGGCTTCCTCCCCTTCCTCACCTCAGTGACCCTCTGCTTTGGCCTGATTGCCCTTTGGAGCAAGGGC
AAAGGTCGGGTCAAACATCACATGACCTTTGACTTTGTGGCACCTCGGCCCTCTGGGGATAAAAACTCTG
GGGGTAACCGGGTCACTGCCAAGCTCTTCTGA

Translation (593 aa):
MDAATAPKQAWPPWPPLLFLLLLPGGSGGSCPAVCDCTSQPQAVLCGHRQLEAVPGGLPLDTELLDLSGN
RLWGLQQGMLSRLSLLQELDLSYNQLSTLEPGAFHGLQSLLTLRLQGNRLRIMGPGVFSGLSALTLLDLR
LNQIVLFLDGAFGELGSLQKLEVGDNHLVFVAPGAFAGLAKLSTLTLERCNLSTVPGLALARLPALVALR
LRELDIGRLPAGALRGLGQLKELEIHLWPSLEALDPGSLVGLNLSSLAITRCNLSSVPFQALYHLSFLRV
LDLSQNPISAIPARRLSPLVRLQELRLSGACLTSIAAHAFHGLTAFHLLDVADNALQTLEETAFPSPDKL
VTLRLSGNPLTCDCRLLWLLRLRRHLDFGMSPPACAGPHHVQGKSLKEFSDILPPGHFTCKPALIRKSGP
RWVIAEEGGHAVFSCSGDGDPAPTVSWMRPHGAWLGRAGRVRVLEDGTLEIRSVQLRDRGAYVCVVSNVA
GNDSLRTWLEVIQVEPPNGTLSDPNITVPGIPGPFFLDSRGVAMVLAVGFLPFLTSVTLCFGLIALWSKG
KGRVKHHMTFDFVAPRPSGDKNSGGNRVTAKLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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