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Report for CCDS30932.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30932.1 Public Homo sapiens 1 STYXL2 24 110 108 CCDS HistoryNCBI Gene:92235Re-query CCDS DB by CCDS ID:30932.1Re-query CCDS DB by GeneID:92235See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30932.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000271385.9 ENSP00000271385.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000271385.9Link to Ensembl Protein Viewer:ENSP00000271385.5Re-query CCDS DB by Nucleotide ID:ENST00000271385Re-query CCDS DB by Protein ID:ENSP00000271385
Original member Current member EBI ENST00000361200.7 ENSP00000354483.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361200.7Link to Ensembl Protein Viewer:ENSP00000354483.2Re-query CCDS DB by Nucleotide ID:ENST00000361200Re-query CCDS DB by Protein ID:ENSP00000354483
Original member Current member EBI ENST00000443333.1 ENSP00000404874.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000443333.1Link to Ensembl Protein Viewer:ENSP00000404874.1Re-query CCDS DB by Nucleotide ID:ENST00000443333Re-query CCDS DB by Protein ID:ENSP00000404874
Original member Current member NCBI NM_001080426.3 NP_001073895.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080426.3Link to Protein Sequence:NP_001073895.1Re-query CCDS DB by Nucleotide ID:NM_001080426Re-query CCDS DB by Protein ID:NP_001073895Link to BLAST:NP_001073895.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073895.1 1158 Q5VZP5 1158 100% 0 0

Chromosomal Locations for CCDS 30932.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 167094850 167094959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 167113710 167113804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 167117328 167117559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 167119249 167119466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 167125787 167128608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3477 nt):
ATGGCGACCAGAAAGGACACAGAGGAGGAGCAGGTAGTCCCAAGCGAGGAGGACGAAGCCAACGTGAGGG
CGGTGCAGGCCCACTACCTCCGAAGCCCCTCCCCTAGCCAGTATTCGATGGTCTCAGATGCAGAAACAGA
AAGCATTTTCATGGAACCCATTCACCTCTCCTCAGCCATTGCAGCCAAACAGATCATCAATGAAGAACTC
AAGCCACCGGGGGTCAGAGCAGACGCAGAGTGTCCAGGCATGCTGGAGTCTGCTGAACAGCTGCTGGTGG
AGGACCTGTACAACCGCGTCAGGGAGAAGATGGATGACACCAGCCTCTATAATACGCCCTGTGTCCTGGA
CCTACAGCGGGCCCTGGTTCAGGATCGCCAAGAGGCGCCCTGGAATGAGGTGGATGAGGTCTGGCCCAAT
GTCTTCATAGCTGAGAAGAGTGTGGCTGTGAACAAGGGGAGGCTGAAGAGGCTGGGAATCACCCACATTC
TGAATGCTGCGCATGGCACCGGCGTTTACACTGGCCCCGAATTCTACACTGGCCTGGAGATCCAGTACCT
GGGTGTAGAGGTGGATGACTTTCCTGAGGTGGACATTTCCCAGCATTTCCGGAAGGCGTCTGAGTTCCTG
GATGAGGCGCTGCTGACTTACAGAGGGAAAGTCCTGGTCAGCAGCGAAATGGGCATCAGCCGGTCAGCAG
TGCTGGTGGTCGCCTACCTGATGATCTTCCACAACATGGCCATCCTGGAGGCTTTGATGACCGTGCGTAA
GAAGCGGGCCATCTACCCCAATGAGGGCTTCCTGAAGCAGCTGCGGGAGCTCAATGAGAAGTTGATGGAG
GAGAGAGAAGAGGACTATGGCCGGGAGGGGGGATCAGCTGAGGCTGAGGAGGGCGAGGGCACTGGGAGCA
TGCTCGGGGCCAGAGTGCACGCCCTGACGGTGGAAGAGGAGGACGACAGCGCCAGCCACCTGAGTGGCTC
CTCCCTGGGGAAGGCCACCCAGGCCTCCAAGCCCCTCACCCTCATAGACGAGGAGGAGGAGGAGAAACTG
TACGAGCAGTGGAAGAAGGGGCAGGGCCTCCTCTCAGACAAGGTCCCCCAGGATGGAGGTGGCTGGCGCT
CAGCCTCCTCTGGCCAGGGTGGGGAGGAGCTCGAGGACGAGGACGTGGAGAGGATCATCCAGGAGTGGCA
GAGCCGAAACGAGAGGTACCAAGCAGAAGGGTACCGGAGGTGGGGAAGGGAGGAGGAGAAGGAGGAGGAG
AGCGACGCTGGCTCCTCGGTGGGGAGGCGGCGGCGCACCCTGAGCGAGAGCAGCGCCTGGGAGAGCGTGA
GCAGCCACGACATCTGGGTCCTGAAGCAGCAGCTGGAGCTGAACCGCCCGGACCACGGCAGGAGGCGCCG
CGCAGACTCGATGTCCTCGGAGAGCACCTGGGACGCATGGAACGAGAGGCTGCTGGAGATTGAGAAGGAG
GCTTCCCGGAGGTACCACGCCAAGAGCAAGAGAGAGGAGGCGGCAGACAGGAGCTCAGAAGCAGGGAGCA
GGGTGCGGGAGGATGATGAGGACAGCGTGGGCTCTGAGGCCAGTTCCTTCTACAACTTCTGCAGCAGGAA
CAAGGACAAGCTCACTGCCCTGGAAAGATGGAAGATCAAGAGAATCCAATTTGGATTTCACAAGAAAGAC
TTGGGAGCGGGAGACAGCAGCGGTGAGCCCGGTGCAGAGGAGGCAGTAGGGGAGAAGAACCCCTCCGACG
TCAGCCTGACAGCCTACCAGGCCTGGAAGCTGAAACACCAGAAGAAGGTGGGCAGTGAGAACAAGGAGGA
GGTGGTGGAGCTCAGCAAGGGGGAGGACTCGGCCTTGGCTAAGAAGAGACAACGGAGGCTGGAGCTGCTG
GAGAGAAGCCGGCAGACGCTGGAGGAGAGCCAGTCTATGGCAAGCTGGGAGGCGGACAGCTCCACGGCCA
GCGGGAGCATTCCCCTGTCTGCGTTCTGGTCTGCAGACCCCTCAGTCAGCGCTGATGGGGACACGACGTC
AGTACTGAGCACCCAGAGCCACCGCTCCCACCTGTCTCAGGCTGCAAGCAACATAGCGGGGTGTTCAACC
TCCAACCCCACCACACCCCTGCCTAACCTGCCAGTGGGGCCTGGAGACACCATTTCCATTGCCAGTATCC
AGAACTGGATTGCCAATGTAGTCAGTGAGACCCTTGCTCAGAAGCAAAATGAAATGCTGCTGTTGTCCCG
CTCACCGTCTGTTGCAAGCATGAAGGCAGTACCAGCGGCTAGCTGCCTGGGGGATGACCAAGTCTCCATG
CTTAGTGGACACAGCAGCTCCTCCTTGGGTGGCTGCCTGTTGCCTCAGAGCCAGGCAAGACCCAGCTCTG
ACATGCAGTCTGTGCTGTCCTGCAACACCACACTGAGCTCACCCGCGGAAAGTTGCAGAAGCAAAGTGAG
GGGGACCAGCAAGCCCATCTTCAGCCTCTTTGCTGACAATGTGGACCTAAAGGAACTTGGCCGGAAGGAG
AAGGAGATGCAGATGGAGCTTAGGGAGAAGATGTCTGAGTACAAAATGGAAAAGCTGGCCTCAGACAACA
AACGCAGCTCCCTCTTCAAGAAGAAGAAGGTCAAGGAAGATGAGGATGATGGTGTGGGTGATGGGGATGA
GGACACTGACAGTGCCATAGGGAGCTTCCGATATTCTTCCCGCAGTAATTCCCAGAAACCTGAAACAGAC
ACATGCTCCTCCCTGGCTGTCTGTGATCACTATGCAAGTGGCAGCAGAGTTGGCAAAGAGATGGATAGCA
GTATTAATAAGTGGCTCAGTGGCCTCAGGACGGAGGAAAAACCTCCTTTCCAAAGTGACTGGTCTGGAAG
TTCCAGAGGGAAGTACACCAGATCGTCCCTGCTCAGGGAGACAGAGTCTAAATCCTCCAGTTACAAGTTT
TCCAAATCCCAGTCAGAGGAACAGGACACCTCCTCCTACCACGAGGCAAATGGCAACTCTGTAAGAAGCA
CTTCACGGTTCTCATCTTCCTCCACCAGGGAGGGCAGAGAGATGCACAAGTTCTCCAGGTCCACGTACAA
CGAGACCTCAAGTTCCCGAGAGGAGAGCCCAGAGCCCTACTTCTTCCGCCGGACCCCAGAGTCCTCAGAA
AGGGAAGAGTCCCCAGAACCACAGCGCCCAAATTGGGCCAGGTCCAGGGACTGGGAAGATGTGGAAGAGT
CATCCAAGTCAGACTTCTCTGAATTTGGAGCCAAGAGGAAGTTCACCCAGAGCTTTATGAGGTCTGAAGA
AGAGGGAGAGAAAGAGAGGACAGAAAACAGAGAAGAAGGGAGGTTTGCATCTGGACGGCGGTCCCAGTAT
CGGAGAAGCACTGACAGGGAGGAAGAGGAAGAAATGGACGATGAAGCCATCATTGCTGCTTGGAGACGCC
GGCAAGAAGAAACCAGGACCAAGCTGCAGAAAAGGAGGGAGGACTGA

Translation (1158 aa):
MATRKDTEEEQVVPSEEDEANVRAVQAHYLRSPSPSQYSMVSDAETESIFMEPIHLSSAIAAKQIINEEL
KPPGVRADAECPGMLESAEQLLVEDLYNRVREKMDDTSLYNTPCVLDLQRALVQDRQEAPWNEVDEVWPN
VFIAEKSVAVNKGRLKRLGITHILNAAHGTGVYTGPEFYTGLEIQYLGVEVDDFPEVDISQHFRKASEFL
DEALLTYRGKVLVSSEMGISRSAVLVVAYLMIFHNMAILEALMTVRKKRAIYPNEGFLKQLRELNEKLME
EREEDYGREGGSAEAEEGEGTGSMLGARVHALTVEEEDDSASHLSGSSLGKATQASKPLTLIDEEEEEKL
YEQWKKGQGLLSDKVPQDGGGWRSASSGQGGEELEDEDVERIIQEWQSRNERYQAEGYRRWGREEEKEEE
SDAGSSVGRRRRTLSESSAWESVSSHDIWVLKQQLELNRPDHGRRRRADSMSSESTWDAWNERLLEIEKE
ASRRYHAKSKREEAADRSSEAGSRVREDDEDSVGSEASSFYNFCSRNKDKLTALERWKIKRIQFGFHKKD
LGAGDSSGEPGAEEAVGEKNPSDVSLTAYQAWKLKHQKKVGSENKEEVVELSKGEDSALAKKRQRRLELL
ERSRQTLEESQSMASWEADSSTASGSIPLSAFWSADPSVSADGDTTSVLSTQSHRSHLSQAASNIAGCST
SNPTTPLPNLPVGPGDTISIASIQNWIANVVSETLAQKQNEMLLLSRSPSVASMKAVPAASCLGDDQVSM
LSGHSSSSLGGCLLPQSQARPSSDMQSVLSCNTTLSSPAESCRSKVRGTSKPIFSLFADNVDLKELGRKE
KEMQMELREKMSEYKMEKLASDNKRSSLFKKKKVKEDEDDGVGDGDEDTDSAIGSFRYSSRSNSQKPETD
TCSSLAVCDHYASGSRVGKEMDSSINKWLSGLRTEEKPPFQSDWSGSSRGKYTRSSLLRETESKSSSYKF
SKSQSEEQDTSSYHEANGNSVRSTSRFSSSSTREGREMHKFSRSTYNETSSSREESPEPYFFRRTPESSE
REESPEPQRPNWARSRDWEDVEESSKSDFSEFGAKRKFTQSFMRSEEEGEKERTENREEGRFASGRRSQY
RRSTDREEEEEMDDEAIIAAWRRRQEETRTKLQKRRED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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