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Report for CCDS30940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30940.1 Public Homo sapiens 1 RC3H1 24 110 108 CCDS HistoryNCBI Gene:149041Re-query CCDS DB by CCDS ID:30940.1Re-query CCDS DB by GeneID:149041See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30940.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000258349.8 ENSP00000258349.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000258349.8Link to Ensembl Protein Viewer:ENSP00000258349.4Re-query CCDS DB by Nucleotide ID:ENST00000258349Re-query CCDS DB by Protein ID:ENSP00000258349
Original member Current member EBI ENST00000367696.7 ENSP00000356669.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367696.7Link to Ensembl Protein Viewer:ENSP00000356669.2Re-query CCDS DB by Nucleotide ID:ENST00000367696Re-query CCDS DB by Protein ID:ENSP00000356669
Original member Current member NCBI NM_172071.4 NP_742068.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_172071.4Link to Protein Sequence:NP_742068.1Re-query CCDS DB by Nucleotide ID:NM_172071Re-query CCDS DB by Protein ID:NP_742068Link to BLAST:NP_742068.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_742068.1 1133 Q5TC82-1 1133 100% 0 0

Chromosomal Locations for CCDS 30940.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 173938721 173938871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173941265 173941380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173943442 173943615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173946476 173946608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173946746 173946836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173947369 173947582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173951986 173952138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173961077 173961244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173961725 173962095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173963973 173964187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173964839 173965120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173970505 173970617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173972509 173972627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173978488 173978620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173980809 173981009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173982727 173982902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173983418 173983657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173984499 173984619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173992755 173992985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3402 nt):
ATGCCTGTACAAGCTCCACAATGGACGGATTTCCTCTCCTGCCCAATTTGCACTCAGACTTTCGACGAAA
CAATTCGAAAGCCCATCAGTTTGGGTTGTGGCCATACTGTCTGCAAGATGTGCCTGAATAAACTCCACCG
CAAGGCTTGCCCATTTGACCAGACCACTATCAATACAGACATTGAGCTCCTCCCTGTGAACTCAGCATTG
CTGCAGCTCGTGGGTGCTCAGGTCCCTGAGCAGCAGCCTATTACTTTGTGTAGTGGGGTTGAAGACACAA
AGCATTATGAGGAAGCCAAGAAATGTGTAGAAGAATTAGCATTGTACTTAAAACCGCTCAGCAGTGCTAG
AGGAGTGGGTCTGAACAGCACTACTCAGAGTGTTCTGAGTCGCCCAATGCAGAGGAAGCTTGTGACTCTA
GTCCACTGTCAACTAGTAGAAGAAGAAGGCAGGATTCGTGCCATGAGGGCAGCTCGATCTTTAGGTGAAC
GAACAGTTACAGAGCTCATTCTCCAGCACCAGAATCCTCAGCAACTCTCTTCCAATCTTTGGGCAGCAGT
AAGGGCTAGGGGATGCCAGTTCCTTGGACCAGCAATGCAGGAGGAAGCTTTAAAGTTGGTTCTGCTGGCC
TTAGAAGATGGTTCTGCTTTGTCAAGAAAAGTATTGGTTCTGTTTGTGGTGCAAAGATTGGAGCCACGGT
TTCCTCAAGCCTCTAAAACTAGCATTGGGCATGTTGTTCAGCTCCTTTATAGAGCCTCCTGTTTCAAGGT
CACCAAACGTGATGAAGACTCTTCTTTGATGCAGCTGAAAGAAGAATTTAGAACCTATGAAGCTCTGCGG
CGAGAACATGACTCCCAGATAGTGCAGATTGCTATGGAAGCAGGCTTACGAATTGCACCGGACCAGTGGT
CCTCTTTGCTTTATGGAGACCAGTCTCACAAATCTCATATGCAGTCCATTATTGACAAGTTGCAGACTCC
AGCCTCTTTTGCACAGAGTGTTCAGGAACTAACAATTGCTCTCCAGCGAACTGGAGACCCAGCAAACTTG
AACCGACTAAGACCCCATTTGGAGCTGTTAGCAAACATTGACCCTAGTCCAGATGCTCCTCCTCCTACTT
GGGAACAGCTGGAAAATGGGCTGGTTGCTGTGCGTACAGTGGTACATGGGCTGGTTGATTATATCCAGAA
CCACAGCAAAAAAGGAGCAGATCAGCAGCAGCCTCCACAGCATAGCAAATACAAAACATACATGTGTCGA
GATATGAAGCAGAGAGGAGGATGCCCTCGTGGGGCCAGCTGTACATTTGCACACTCACAGGAGGAACTGG
AAAAATTTCGTAAAATGAATAAGCGCCTGGTTCCGAGAAGACCCTTGAGTGCCTCTTTGGGTCAACTTAA
TGAGGTGGGCCTGCCTTCAGCAGCTATCCTTCCAGATGAAGGTGCAGTGGATCTCCCTAGCAGAAAACCT
CCTGCTCTGCCAAATGGAATTGTATCAACAGGGAATACAGTAACACAGCTTATTCCGCGAGGGACAGACC
CCAGCTATGATTCTAGTCTGAAACCAGGAAAAATAGATCATCTGAGCAGTAGTGCTCCTGGATCCCCTCC
TGACCTGCTAGAATCTGTTCCTAAGAGTATTTCTGCCTTACCTGTGAATCCACATTCTATACCTCCAAGG
GGGCCAGCAGATCTGCCTCCAATGCCTGTTACCAAACCACTTCAGATGGTACCTCGAGGTTCTCAGTTAT
ATCCAGCACAACAGACGGATGTTTATTATCAGGATCCTCGAGGAGCAGCTCCGCCATTTGAACCAGCACC
TTATCAGCAGGGTATGTATTATACTCCACCACCACAATGTGTGTCCCGCTTTGTCCGACCTCCACCATCT
GCTCCTGAACCTGCTCCTCCCTACTTGGATCATTATCCACCCTACCTCCAAGAACGTGTTGTAAACTCTC
AGTATGGCACACAGCCACAGCAGTACCCACCTATATACCCATCTCACTATGATGGCCGTCGAGTGTACCC
TGCTCCGTCTTACACAAGAGAAGAGATATTCCGAGAAAGCCCTATACCCATTGAGATTCCACCTGCAGCA
GTACCATCGTATGTACCAGAATCCAGAGAAAGATACCAACAGATCGAGAGTTACTATCCAGTGGCTCCTC
ATCCAACTCAGATCAGACCTTCGTACCTCAGAGAACCTCCTTATAGCCGGCTTCCTCCTCCTCCCCAGCC
TCATCCTAGTCTAGATGAACTACATCGCCGACGAAAGGAAATAATGGCCCAGCTAGAGGAAAGAAAGGTT
ATCTCTCCACCTCCTTTTGCACCTTCACCAACCTTGCCTCCTACCTTTCATCCGGAAGAATTTTTGGATG
AAGACTTGAAGGTAGCTGGGAAATACAAAGGAAATGATTATAGCCAATACTCTCCCTGGTCATGTGACAC
CATCGGCTCCTACATTGGAACCAAAGATGCAAAACCCAAAGATGTTGTGGCAGCAGGGAGTGTGGAAATG
ATGAATGTGGAGAGTAAAGGAATGAGGGACCAGCGATTAGATCTTCAGAGAAGAGCAGCAGAAACCAGTG
ATGATGACCTCATCCCATTTGGAGACCGACCAACAGTGTCTCGGTTTGGTGCCATCTCACGAACTTCCAA
AACTATATATCAGGGTGCTGGTCCAATGCAGGCTATGGCACCTCAGGGAGCTCCTACAAAATCTATTAAC
ATTTCAGATTATAGTCCATATGGAACCCACGGTGGCTGGGGAGCTTCTCCATATTCACCTCATCAAAACA
TACCTTCTCAGGGACACTTCAGTGAGAGGGAGAGAATATCTATGTCAGAAGTGGCCAGTCATGGAAAACC
CCTTCCATCTGCTGAGAGAGAACAGCTACGACTAGAATTGCAGCAATTGAACCATCAGATTAGCCAGCAG
ACCCAGCTACGTGGACTAGAGGCTGTTAGTAACAGGCTGGTGTTGCAGAGGGAGGCAAACACCCTGGCAG
GCCAGTCACAGCCCCCACCACCGCCACCTCCAAAATGGCCTGGGATGATCTCAAGTGAGCAGTTGAGCTT
GGAACTGCACCAGGTGGAAAGGGAAATCGGGAAGAGAACACGGGAACTGAGTATGGAAAACCAGTGTTCT
CTGGACATGAAAAGCAAACTGAATACAAGTAAACAAGCAGAAAATGGACAACCAGAACCACAAAACAAGG
TTCCGGCTGAGGACCTTACATTGACATTCAGTGATGTACCAAATGGATCAGCCTTGACACAAGAGAATAT
CAGCCTCCTATCAAACAAGACCAGCTCTCTGAACCTGTCAGAGGACCCTGAGGGAGGAGGGGATAATAAT
GACTCCCAGAGATCAGGAGTTACTCCCAGTTCTGCTCCTTAA

Translation (1133 aa):
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTDIELLPVNSAL
LQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVGLNSTTQSVLSRPMQRKLVTL
VHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLSSNLWAAVRARGCQFLGPAMQEEALKLVLLA
LEDGSALSRKVLVLFVVQRLEPRFPQASKTSIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALR
REHDSQIVQIAMEAGLRIAPDQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANL
NRLRPHLELLANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAAILPDEGAVDLPSRKP
PALPNGIVSTGNTVTQLIPRGTDPSYDSSLKPGKIDHLSSSAPGSPPDLLESVPKSISALPVNPHSIPPR
GPADLPPMPVTKPLQMVPRGSQLYPAQQTDVYYQDPRGAAPPFEPAPYQQGMYYTPPPQCVSRFVRPPPS
APEPAPPYLDHYPPYLQERVVNSQYGTQPQQYPPIYPSHYDGRRVYPAPSYTREEIFRESPIPIEIPPAA
VPSYVPESRERYQQIESYYPVAPHPTQIRPSYLREPPYSRLPPPPQPHPSLDELHRRRKEIMAQLEERKV
ISPPPFAPSPTLPPTFHPEEFLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEM
MNVESKGMRDQRLDLQRRAAETSDDDLIPFGDRPTVSRFGAISRTSKTIYQGAGPMQAMAPQGAPTKSIN
ISDYSPYGTHGGWGASPYSPHQNIPSQGHFSERERISMSEVASHGKPLPSAEREQLRLELQQLNHQISQQ
TQLRGLEAVSNRLVLQREANTLAGQSQPPPPPPPKWPGMISSEQLSLELHQVEREIGKRTRELSMENQCS
LDMKSKLNTSKQAENGQPEPQNKVPAEDLTLTFSDVPNGSALTQENISLLSNKTSSLNLSEDPEGGGDNN
DSQRSGVTPSSAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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