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Report for CCDS31013.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31013.1 Public Homo sapiens 1 PLXNA2 24 110 108 CCDS HistoryNCBI Gene:5362Re-query CCDS DB by CCDS ID:31013.1Re-query CCDS DB by GeneID:5362See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 31013.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367033.4 ENSP00000356000.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367033.4Link to Ensembl Protein Viewer:ENSP00000356000.3Re-query CCDS DB by Nucleotide ID:ENST00000367033Re-query CCDS DB by Protein ID:ENSP00000356000
Original member Current member NCBI NM_025179.4 NP_079455.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025179.4Link to Protein Sequence:NP_079455.3Re-query CCDS DB by Nucleotide ID:NM_025179Re-query CCDS DB by Protein ID:NP_079455Link to BLAST:NP_079455.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079455.3 1894 O75051-1 1894 100% 0 0

Chromosomal Locations for CCDS 31013.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 208027243 208027338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208028009 208028159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208028830 208029042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208031590 208031759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208033319 208033509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208034493 208034592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208038371 208038474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208038825 208038984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208039621 208039767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208039992 208040058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208042098 208042366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208043061 208043203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208044508 208044742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208045067 208045210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208045878 208046117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208051009 208051102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208051256 208051423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208052327 208052463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208054421 208054538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208060686 208060837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208079260 208079450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208082412 208082508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208084380 208084580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208092786 208092900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208096029 208096125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208096730 208096883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208098846 208098969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208103147 208103247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208142329 208142463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208210280 208210462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 208216735 208217922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5685 nt):
ATGGAACAGAGGCGGCCCTGGCCCCGGGCCCTGGAGGTGGACAGCCGCTCTGTGGTCCTGCTCTCAGTGG
TCTGGGTGCTGCTGGCCCCCCCAGCAGCCGGCATGCCTCAGTTCAGCACCTTCCACTCTGAGAATCGTGA
CTGGACCTTCAACCACTTGACCGTCCACCAAGGGACGGGGGCCGTCTATGTGGGGGCCATCAACCGGGTC
TATAAGCTGACAGGCAACCTGACCATCCAGGTGGCTCATAAGACAGGGCCAGAAGAGGACAACAAGTCTT
GTTACCCGCCCCTCATCGTGCAGCCCTGCAGCGAAGTGCTCACCCTCACCAACAATGTCAACAAGCTGCT
CATCATTGACTACTCTGAGAACCGCCTGCTGGCCTGTGGGAGCCTCTACCAGGGGGTCTGCAAGCTGCTG
CGGCTGGATGACCTCTTCATCCTGGTGGAGCCATCCCACAAGAAGGAGCACTACCTGTCCAGTGTCAACA
AGACGGGCACCATGTACGGGGTGATTGTGCGCTCTGAGGGTGAGGATGGCAAGCTCTTCATCGGCACGGC
TGTGGATGGGAAGCAGGATTACTTCCCGACCCTGTCCAGCCGGAAGCTGCCCCGAGACCCTGAGTCCTCA
GCCATGCTCGACTATGAGCTACACAGCGATTTTGTCTCCTCTCTCATCAAGATCCCTTCAGACACCCTGG
CCCTGGTCTCCCACTTTGACATCTTCTACATCTACGGCTTTGCTAGTGGGGGCTTTGTCTACTTTCTCAC
TGTCCAGCCCGAGACCCCTGAGGGTGTGGCCATCAACTCCGCTGGAGACCTCTTCTACACCTCACGCATC
GTGCGGCTCTGCAAGGATGACCCCAAGTTCCACTCATACGTGTCCCTGCCCTTCGGCTGCACCCGGGCCG
GGGTGGAATACCGCCTCCTGCAGGCTGCTTACCTGGCCAAGCCTGGGGACTCACTGGCCCAGGCCTTCAA
TATCACCAGCCAGGACGATGTACTCTTTGCCATCTTCTCCAAAGGGCAGAAGCAGTATCACCACCCGCCC
GATGACTCTGCCCTGTGTGCCTTCCCTATCCGGGCCATCAACTTGCAGATCAAGGAGCGCCTGCAGTCCT
GCTACCAGGGCGAGGGCAACCTGGAGCTCAACTGGCTGCTGGGGAAGGACGTCCAGTGCACCAAGGCGCC
TGTCCCCATCGATGATAACTTCTGTGGACTGGACATCAACCAGCCCCTGGGAGGCTCAACTCCAGTGGAG
GGCCTGACCCTGTACACCACCAGCAGGGACCGCATGACCTCTGTGGCCTCCTACGTTTACAACGGCTACA
GCGTGGTTTTTGTGGGGACTAAGAGTGGCAAGCTGAAAAAGATTCGGGCCGACGGTCCCCCCCATGGTGG
GGTCCAGTACGAGATGGTCTCTGTGCTCAAGGACGGAAGCCCCATCCTCCGGGACATGGCCTTCTCCATT
GATCAGCGCTACCTGTACGTCATGTCTGAGAGACAGGTCACCAGGGTCCCCGTGGAGTCATGTGAGCAGT
ATACGACTTGTGGGGAGTGCCTGAGCTCTGGGGACCCTCACTGTGGCTGGTGTGCCCTGCACAACATGTG
CTCCCGCAGGGACAAATGCCAACAGGCCTGGGAACCTAATCGATTTGCTGCCAGCATCAGCCAGTGTGTG
AGCCTTGCAGTGCATCCCAGCAGCATCTCAGTATCTGAGCACAGCCGGTTGCTTAGCCTGGTAGTGAGTG
ATGCTCCTGATCTATCTGCGGGTATCGCCTGTGCCTTTGGGAACCTGACAGAGGTGGAGGGGCAGGTGTC
CGGGAGCCAGGTCATCTGCATCTCACCTGGGCCCAAGGATGTCCCTGTCATCCCGCTGGATCAAGACTGG
TTTGGGCTGGAGCTACAGCTGAGGTCCAAGGAGACAGGGAAGATATTTGTCAGCACCGAGTTCAAGTTTT
ACAACTGCAGTGCCCACCAACTGTGCCTGTCCTGTGTCAACAGCGCCTTCCGCTGCCATTGGTGCAAGTA
CCGCAACCTCTGCACTCATGACCCCACCACCTGCTCCTTCCAGGAGGGCCGGATCAATATTTCAGAGGAC
TGTCCCCAGCTGGTGCCCACAGAGGAGATCTTGATTCCAGTCGGGGAGGTAAAGCCAATCACCCTTAAGG
CGCGAAATCTGCCCCAGCCGCAGTCCGGCCAGCGAGGCTATGAGTGTGTCCTCAACATACAAGGAGCCAT
CCACCGGGTCCCCGCTCTGCGCTTCAACAGCTCCAGCGTTCAGTGTCAGAACAGCTCGTACCAGTATGAT
GGCATGGACATCAGCAATCTGGCCGTGGATTTCGCTGTGGTGTGGAACGGCAATTTCATCATTGACAACC
CTCAGGACCTGAAAGTCCATCTCTACAAGTGTGCAGCCCAGCGGGAGAGCTGCGGCCTCTGCCTCAAGGC
CGACCGGAAGTTTGAGTGTGGCTGGTGCAGCGGCGAGCGCAGGTGCACCCTCCACCAGCACTGTACCAGC
CCTTCCAGCCCCTGGCTCGACTGGTCCAGCCACAATGTCAAGTGCTCCAACCCTCAAATCACCGAGATTT
TGACGGTGTCTGGACCGCCGGAAGGAGGGACGCGAGTGACCATCCATGGCGTGAACCTGGGTCTGGACTT
CTCCGAGATCGCCCACCATGTGCAGGTGGCTGGGGTGCCCTGCACGCCCCTCCCAGGGGAATACATCATC
GCTGAGCAGATTGTCTGTGAGATGGGCCATGCCCTCGTGGGAACCACCTCCGGGCCAGTACGCCTGTGTA
TTGGCGAGTGTAAGCCAGAGTTCATGACGAAGTCCCATCAGCAGTACACCTTCGTGAACCCTTCTGTGCT
GTCACTCAACCCAATCCGAGGTCCCGAGTCAGGAGGCACTATGGTGACCATTACCGGCCATTACCTTGGG
GCTGGGAGCAGCGTGGCAGTCTACCTGGGCAACCAGACCTGCGAGTTCTACGGGAGGTCAATGAGTGAGA
TCGTGTGTGTCTCACCCCCATCATCCAATGGCCTTGGCCCGGTCCCTGTTTCTGTGAGTGTCGACCGAGC
CCATGTGGATAGCAACCTGCAGTTTGAGTACATAGATGACCCTCGGGTCCAGCGCATCGAGCCAGAGTGG
AGCATTGCCAGTGGCCACACACCCCTGACCATCACAGGCTTCAACCTGGATGTCATTCAGGAGCCAAGGA
TCCGAGTCAAATTCAATGGCAAAGAATCTGTCAATGTGTGTAAAGTTGTGAACACAACCACCCTCACCTG
CCTGGCACCCTCTCTGACCACGGACTACCGCCCTGGCCTGGACACTGTGGAACGCCCAGATGAGTTTGGA
TTTGTCTTTAACAATGTCCAATCCTTGCTAATTTACAACGACACCAAGTTTATCTACTACCCCAACCCGA
CCTTTGAACTGCTTAGCCCTACTGGAGTCTTGGATCAAAAGCCAGGATCGCCCATCATTCTGAAGGGCAA
AAACCTCTGCCCTCCTGCCTCTGGAGGGGCCAAACTCAACTACACTGTGCTCATCGGAGAGACCCCTTGT
GCTGTCACCGTATCTGAGACCCAGCTTCTCTGCGAGCCTCCCAACCTCACCGGGCAGCACAAGGTCATGG
TTCACGTGGGCGGGATGGTGTTCTCGCCTGGCTCGGTGAGTGTCATCTCAGACAGCTTGCTGACCCTGCC
AGCCATCGTCAGCATCGCGGCCGGCGGCAGCCTCCTCCTCATCATCGTCATCATCGTCCTCATTGCCTAC
AAGCGCAAGTCTCGAGAAAATGACCTCACTCTCAAGCGGCTGCAAATGCAGATGGACAATCTGGAGTCCC
GTGTGGCCTTGGAGTGCAAGGAAGCTTTTGCTGAGCTCCAGACGGATATCAATGAGTTGACCAGTGACCT
GGACCGCTCAGGAATCCCTTACCTGGACTATCGTACCTACGCTATGCGAGTCCTGTTCCCGGGCATCGAG
GACCACCCCGTCCTGCGGGAGCTGGAGGTACAAGGAAACGGGCAGCAGCACGTGGAGAAGGCCCTGAAGC
TCTTTGCCCAGCTCATCAACAACAAGGTGTTCCTGCTGACCTTCATCCGCACCCTGGAGCTGCAGCGCAG
TTTCTCCATGCGCGACCGGGGCAACGTGGCTTCGCTCATCATGACCGGCCTGCAGGGCCGCCTGGAATAT
GCCACTGATGTCCTCAAGCAGCTGCTCTCTGACCTCATCGATAAGAACCTGGAGAACAAGAACCACCCCA
AGCTGCTACTCCGGAGGACAGAGTCTGTGGCTGAAAAGATGCTGACCAATTGGTTCGCCTTCCTCCTGCA
CAAGTTCCTAAAGGAGTGCGCAGGGGAGCCACTCTTCATGCTATACTGTGCCATCAAGCAGCAGATGGAG
AAGGGCCCCATTGATGCCATCACGGGCGAGGCCCGCTACTCCCTGAGCGAGGACAAGCTCATCCGGCAGC
AGATCGAGTACAAGACCCTGATCCTGAACTGCGTCAACCCTGACAACGAGAACAGTCCAGAGATCCCAGT
GAAGGTGTTAAACTGTGACACCATCACACAGGTCAAGGAGAAGATTCTTGATGCCGTGTATAAGAATGTG
CCCTATTCCCAGCGGCCGAGGGCAGTGGACATGGACTTGGAGTGGCGCCAAGGCCGGATCGCCCGGGTCG
TGCTGCAAGATGAGGACATCACCACCAAGATTGAGGGTGACTGGAAGCGGCTCAACACACTGATGCATTA
TCAGGTGTCAGACAGGTCGGTGGTGGCTCTGGTCCCCAAACAGACCTCCTCCTACAACATCCCTGCCTCT
GCCAGCATCTCCCGGACGTCCATCAGCAGATACGACTCCTCCTTCAGGTATACGGGCAGCCCCGACAGCC
TGCGGTCCCGGGCCCCGATGATCACCCCAGACCTGGAAAGTGGGGTCAAGGTGTGGCATCTGGTGAAGAA
CCATGACCACGGTGACCAGAAGGAGGGTGACCGGGGCAGCAAGATGGTGTCCGAGATCTACCTGACCCGG
CTACTGGCCACCAAGGGCACCCTGCAGAAGTTTGTGGACGACTTGTTTGAGACCTTGTTCAGCACTGTGC
ACCGGGGCAGCGCTCTCCCCCTGGCCATCAAGTACATGTTTGATTTCCTAGATGAGCAGGCAGACAGGCA
CAGCATCCATGACACAGATGTGCGGCACACCTGGAAAAGCAACTGCCTCCCTCTGCGCTTCTGGGTGAAC
GTGATTAAGAACCCCCAGTTCGTGTTTGACATCCACAAGGGCAGCATCACGGACGCCTGCCTCTCTGTGG
TGGCCCAGACCTTCATGGACTCTTGTTCAACGTCAGAGCACCGGCTGGGCAAGGACTCCCCCTCCAACAA
GCTGCTCTATGCCAAGGACATCCCCAGCTACAAGAGCTGGGTGGAGAGATACTACGCAGACATCGCCAAG
CTCCCAGCCATCAGTGACCAGGACATGAATGCCTACCTCGCCGAGCAGTCCCGCCTGCACGCCGTGGAGT
TCAACATGCTGAGTGCCCTCAATGAGATCTACTCCTATGTCAGCAAGTATAGTGAGGAGCTCATCGGGGC
CCTAGAGCAGGATGAGCAGGCACGGCGGCAGCGGCTGGCTTATAAGGTGGAGCAGCTCATTAATGCCATG
TCCATTGAGAGCTGA

Translation (1894 aa):
MEQRRPWPRALEVDSRSVVLLSVVWVLLAPPAAGMPQFSTFHSENRDWTFNHLTVHQGTGAVYVGAINRV
YKLTGNLTIQVAHKTGPEEDNKSCYPPLIVQPCSEVLTLTNNVNKLLIIDYSENRLLACGSLYQGVCKLL
RLDDLFILVEPSHKKEHYLSSVNKTGTMYGVIVRSEGEDGKLFIGTAVDGKQDYFPTLSSRKLPRDPESS
AMLDYELHSDFVSSLIKIPSDTLALVSHFDIFYIYGFASGGFVYFLTVQPETPEGVAINSAGDLFYTSRI
VRLCKDDPKFHSYVSLPFGCTRAGVEYRLLQAAYLAKPGDSLAQAFNITSQDDVLFAIFSKGQKQYHHPP
DDSALCAFPIRAINLQIKERLQSCYQGEGNLELNWLLGKDVQCTKAPVPIDDNFCGLDINQPLGGSTPVE
GLTLYTTSRDRMTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVLKDGSPILRDMAFSI
DQRYLYVMSERQVTRVPVESCEQYTTCGECLSSGDPHCGWCALHNMCSRRDKCQQAWEPNRFAASISQCV
SLAVHPSSISVSEHSRLLSLVVSDAPDLSAGIACAFGNLTEVEGQVSGSQVICISPGPKDVPVIPLDQDW
FGLELQLRSKETGKIFVSTEFKFYNCSAHQLCLSCVNSAFRCHWCKYRNLCTHDPTTCSFQEGRINISED
CPQLVPTEEILIPVGEVKPITLKARNLPQPQSGQRGYECVLNIQGAIHRVPALRFNSSSVQCQNSSYQYD
GMDISNLAVDFAVVWNGNFIIDNPQDLKVHLYKCAAQRESCGLCLKADRKFECGWCSGERRCTLHQHCTS
PSSPWLDWSSHNVKCSNPQITEILTVSGPPEGGTRVTIHGVNLGLDFSEIAHHVQVAGVPCTPLPGEYII
AEQIVCEMGHALVGTTSGPVRLCIGECKPEFMTKSHQQYTFVNPSVLSLNPIRGPESGGTMVTITGHYLG
AGSSVAVYLGNQTCEFYGRSMSEIVCVSPPSSNGLGPVPVSVSVDRAHVDSNLQFEYIDDPRVQRIEPEW
SIASGHTPLTITGFNLDVIQEPRIRVKFNGKESVNVCKVVNTTTLTCLAPSLTTDYRPGLDTVERPDEFG
FVFNNVQSLLIYNDTKFIYYPNPTFELLSPTGVLDQKPGSPIILKGKNLCPPASGGAKLNYTVLIGETPC
AVTVSETQLLCEPPNLTGQHKVMVHVGGMVFSPGSVSVISDSLLTLPAIVSIAAGGSLLLIIVIIVLIAY
KRKSRENDLTLKRLQMQMDNLESRVALECKEAFAELQTDINELTSDLDRSGIPYLDYRTYAMRVLFPGIE
DHPVLRELEVQGNGQQHVEKALKLFAQLINNKVFLLTFIRTLELQRSFSMRDRGNVASLIMTGLQGRLEY
ATDVLKQLLSDLIDKNLENKNHPKLLLRRTESVAEKMLTNWFAFLLHKFLKECAGEPLFMLYCAIKQQME
KGPIDAITGEARYSLSEDKLIRQQIEYKTLILNCVNPDNENSPEIPVKVLNCDTITQVKEKILDAVYKNV
PYSQRPRAVDMDLEWRQGRIARVVLQDEDITTKIEGDWKRLNTLMHYQVSDRSVVALVPKQTSSYNIPAS
ASISRTSISRYDSSFRYTGSPDSLRSRAPMITPDLESGVKVWHLVKNHDHGDQKEGDRGSKMVSEIYLTR
LLATKGTLQKFVDDLFETLFSTVHRGSALPLAIKYMFDFLDEQADRHSIHDTDVRHTWKSNCLPLRFWVN
VIKNPQFVFDIHKGSITDACLSVVAQTFMDSCSTSEHRLGKDSPSNKLLYAKDIPSYKSWVERYYADIAK
LPAISDQDMNAYLAEQSRLHAVEFNMLSALNEIYSYVSKYSEELIGALEQDEQARRQRLAYKVEQLINAM
SIES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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