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Report for CCDS31128.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31128.1 Public Homo sapiens 1 PGBD2 24 110 108 CCDS HistoryNCBI Gene:267002Re-query CCDS DB by CCDS ID:31128.1Re-query CCDS DB by GeneID:267002See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31128.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329291.6 ENSP00000331643.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000329291.6Link to Ensembl Protein Viewer:ENSP00000331643.5Re-query CCDS DB by Nucleotide ID:ENST00000329291Re-query CCDS DB by Protein ID:ENSP00000331643
Original member Current member NCBI NM_170725.3 NP_733843.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_170725.3Link to Protein Sequence:NP_733843.1Re-query CCDS DB by Nucleotide ID:NM_170725Re-query CCDS DB by Protein ID:NP_733843Link to BLAST:NP_733843.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_733843.1 592 Q6P3X8-1 592 100% 0 0

Chromosomal Locations for CCDS 31128.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 248913863 248913879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 248916602 248918363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1779 nt):
ATGGCTTCAACATCCAGAGATGTCATTGCTGGGAGAGGTATCCACTCAAAGGTGAAGTCTGCAAAGCTGC
TTGAGGTTCTGAATGCTATGGAGGAGGAAGAGTCCAACAACAACAGGGAAGAGATTTTCATTGCACCTCC
CGACAATGCTGCGGGGGAATTCACTGATGAGGACTCAGGGGATGAAGACAGCCAGCGAGGTGCTCACCTA
CCTGGCAGTGTGCTGCATGCTTCAGTCCTGTGTGAGGACTCTGGCACCGGGGAGGATAATGACGACCTGG
AGCTGCAGCCAGCCAAGAAGAGGCAGAAAGCAGTTGTGAAACCTCAGCGCATTTGGACCAAAAGAGATAT
TCGTCCAGACTTTGGCAGTTGGACTGCATCAGATCCTCATATTGAGGATCTGAAAAGCCAAGAGCTGAGT
CCCGTGGGCCTTTTTGAGTTGTTTTTTGATGAAGGAACAATTAATTTCATTGTTAATGAAACCAATCGTT
ATGCTTGGCAGAAAAATGTCAATTTGAGTCTTACGGCTCAGGAATTGAAGTGTGTTTTGGGCATTTTGAT
TTTAAGTGGGTACATCTCTTATCCAAGGAGAAGGATGTTCTGGGAAACCTCTCCCGATTCACATCATCAT
CTTGTGGCTGATGCAATTAGAAGGGACAGATTTGAACTAATCTTCTCATACTTACATTTTGCAGATAACA
ACGAACTTGATGCAAGTGATAGGTTTGCCAAGGTCAGACCTCTCATCATCCGGATGAACTGCAATTTCCA
GAAGCATGCACCCTTGGAAGAGTTCTACAGCTTTGGCGAGTCTATGTGTGAGTACTTTGGGCACCGGGGG
TCCAAGCAGCTGCACAGGGGGAAGCCTGTGCGACTTGGCTACAAGATTTGGTGTGGGACAACCAGCAGAG
GCTACTTGGTGTGGTTTGAGCCCTCACAGGGCACACTGTTTACCAAGCCAGACAGGAGCTTGGATCTAGG
AGGCAGTATGGTAATAAAATTTGTGGATGCGCTTCAGGAGCGTGGTTTTCTGCCATATCACATATTTTTT
GACAAGGTTTTCACAAGTGTTAAACTGATGTCCATTTTGAGGAAAAAGGGGGTGAAAGCCACAGGAACTG
TTCGTGAGTACAGGACTGAGCGATGTCCCCTAAAAGACCCCAAAGAACTGAAAAAAATGAAGAGGGGTTC
ATTTGATTACAAAGTCGATGAGAGTGAGGAGATCATCGTGTGCCGCTGGCACGATAGCAGCGTGGTCAAC
ATTTGCTCCAATGCTGTGGGCATAGAGCCAGTGAGGCTGACCAGTCGTCACTCTGGAGCAGCTAAAACGC
GGACTCAGGTCCACCAGCCATCACTGGTGAAGCTGTATCAGGAGAAGGTGGGTGGCGTTGGTAGGATGGA
TCAGAATATTGCCAAGTACAAGGTGAAGATCCGAGGCATGAAGTGGTACTCAAGCTTTATTGGCTATGTC
ATTGATGCTGCCCTCAACAATGCATGGCAGCTGCATAGAATCTGCTGCCAAGATGCCCAGGTGGACCTCC
TTGCCTTCCGGAGATACATTGCCTGTGTGTATCTGGAGAGCAATGCTGACACAACATCTCAAGGGAGGCG
AAGCAGGCGGTTGGAGACTGAGAGCCGCTTCGATATGATTGGGCACTGGATTATCCATCAGGACAAGAGG
ACCCGGTGTGCCCTCTGCCACTCACAGACCAACACCCGGTGTGAGAAGTGCCAGAAGGGTGTCCATGCCA
AATGCTTCAGGGAGTACCACATCCGGTGA

Translation (592 aa):
MASTSRDVIAGRGIHSKVKSAKLLEVLNAMEEEESNNNREEIFIAPPDNAAGEFTDEDSGDEDSQRGAHL
PGSVLHASVLCEDSGTGEDNDDLELQPAKKRQKAVVKPQRIWTKRDIRPDFGSWTASDPHIEDLKSQELS
PVGLFELFFDEGTINFIVNETNRYAWQKNVNLSLTAQELKCVLGILILSGYISYPRRRMFWETSPDSHHH
LVADAIRRDRFELIFSYLHFADNNELDASDRFAKVRPLIIRMNCNFQKHAPLEEFYSFGESMCEYFGHRG
SKQLHRGKPVRLGYKIWCGTTSRGYLVWFEPSQGTLFTKPDRSLDLGGSMVIKFVDALQERGFLPYHIFF
DKVFTSVKLMSILRKKGVKATGTVREYRTERCPLKDPKELKKMKRGSFDYKVDESEEIIVCRWHDSSVVN
ICSNAVGIEPVRLTSRHSGAAKTRTQVHQPSLVKLYQEKVGGVGRMDQNIAKYKVKIRGMKWYSSFIGYV
IDAALNNAWQLHRICCQDAQVDLLAFRRYIACVYLESNADTTSQGRRSRRLETESRFDMIGHWIIHQDKR
TRCALCHSQTNTRCEKCQKGVHAKCFREYHIR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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