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Report for CCDS31129.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31129.1 Public Homo sapiens 1 PGBD2 24 110 108 CCDS HistoryNCBI Gene:267002Re-query CCDS DB by CCDS ID:31129.1Re-query CCDS DB by GeneID:267002See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31129.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355360.8 ENSP00000355424.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000355360.8Link to Ensembl Protein Viewer:ENSP00000355424.3Re-query CCDS DB by Nucleotide ID:ENST00000355360Re-query CCDS DB by Protein ID:ENSP00000355424
Original member Current member NCBI NM_001017434.2 NP_001017434.1 Accepted alive Link to Nucleotide Sequence:NM_001017434.2Link to Protein Sequence:NP_001017434.1Re-query CCDS DB by Nucleotide ID:NM_001017434Re-query CCDS DB by Protein ID:NP_001017434Link to BLAST:NP_001017434.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001017434.1 341 Q6P3X8-2 341 100% 0 0

Chromosomal Locations for CCDS 31129.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 248917338 248918363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGAACTGCAATTTCCAGAAGCATGCACCCTTGGAAGAGTTCTACAGCTTTGGCGAGTCTATGTGTGAGT
ACTTTGGGCACCGGGGGTCCAAGCAGCTGCACAGGGGGAAGCCTGTGCGACTTGGCTACAAGATTTGGTG
TGGGACAACCAGCAGAGGCTACTTGGTGTGGTTTGAGCCCTCACAGGGCACACTGTTTACCAAGCCAGAC
AGGAGCTTGGATCTAGGAGGCAGTATGGTAATAAAATTTGTGGATGCGCTTCAGGAGCGTGGTTTTCTGC
CATATCACATATTTTTTGACAAGGTTTTCACAAGTGTTAAACTGATGTCCATTTTGAGGAAAAAGGGGGT
GAAAGCCACAGGAACTGTTCGTGAGTACAGGACTGAGCGATGTCCCCTAAAAGACCCCAAAGAACTGAAA
AAAATGAAGAGGGGTTCATTTGATTACAAAGTCGATGAGAGTGAGGAGATCATCGTGTGCCGCTGGCACG
ATAGCAGCGTGGTCAACATTTGCTCCAATGCTGTGGGCATAGAGCCAGTGAGGCTGACCAGTCGTCACTC
TGGAGCAGCTAAAACGCGGACTCAGGTCCACCAGCCATCACTGGTGAAGCTGTATCAGGAGAAGGTGGGT
GGCGTTGGTAGGATGGATCAGAATATTGCCAAGTACAAGGTGAAGATCCGAGGCATGAAGTGGTACTCAA
GCTTTATTGGCTATGTCATTGATGCTGCCCTCAACAATGCATGGCAGCTGCATAGAATCTGCTGCCAAGA
TGCCCAGGTGGACCTCCTTGCCTTCCGGAGATACATTGCCTGTGTGTATCTGGAGAGCAATGCTGACACA
ACATCTCAAGGGAGGCGAAGCAGGCGGTTGGAGACTGAGAGCCGCTTCGATATGATTGGGCACTGGATTA
TCCATCAGGACAAGAGGACCCGGTGTGCCCTCTGCCACTCACAGACCAACACCCGGTGTGAGAAGTGCCA
GAAGGGTGTCCATGCCAAATGCTTCAGGGAGTACCACATCCGGTGA

Translation (341 aa):
MNCNFQKHAPLEEFYSFGESMCEYFGHRGSKQLHRGKPVRLGYKIWCGTTSRGYLVWFEPSQGTLFTKPD
RSLDLGGSMVIKFVDALQERGFLPYHIFFDKVFTSVKLMSILRKKGVKATGTVREYRTERCPLKDPKELK
KMKRGSFDYKVDESEEIIVCRWHDSSVVNICSNAVGIEPVRLTSRHSGAAKTRTQVHQPSLVKLYQEKVG
GVGRMDQNIAKYKVKIRGMKWYSSFIGYVIDAALNNAWQLHRICCQDAQVDLLAFRRYIACVYLESNADT
TSQGRRSRRLETESRFDMIGHWIIHQDKRTRCALCHSQTNTRCEKCQKGVHAKCFREYHIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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