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Report for CCDS3114.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3114.1 Public Homo sapiens 3 SLC25A36 24 110 108 CCDS HistoryNCBI Gene:55186Re-query CCDS DB by CCDS ID:3114.1Re-query CCDS DB by GeneID:55186See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3114.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000446041.6 ENSP00000401938.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446041.6Link to Ensembl Protein Viewer:ENSP00000401938.2Re-query CCDS DB by Nucleotide ID:ENST00000446041Re-query CCDS DB by Protein ID:ENSP00000401938
Original member Current member NCBI NM_018155.3 NP_060625.2 Accepted alive Link to Nucleotide Sequence:NM_018155.3Link to Protein Sequence:NP_060625.2Re-query CCDS DB by Nucleotide ID:NM_018155Re-query CCDS DB by Protein ID:NP_060625Link to BLAST:NP_060625.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060625.2 310 Q96CQ1-3 310 100% 0 0

Chromosomal Locations for CCDS 3114.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 140942055 140942095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 140956527 140956691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 140959463 140959540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 140963127 140963227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 140970927 140970993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 140973716 140974005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 140976263 140976453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGAGCCAGAGGGACACGCTGGTGCATCTGTTTGCCGGAGGATGTGGTGGTACAGTGGGAGCTATTCTGA
CATGTCCACTGGAAGTTGTAAAAACACGACTGCAGTCATCTTCTGTGACGCTTTATATTTCTGAAGTTCA
GCTGAACACCATGGCTGGAGCCAGTGTCAACCGAGTAGTGTCTCCCGGACCTCTTCATTGCCTAAAGGTG
ATCTTGGAAAAAGAAGGGCCTCGTTCCTTGTTTAGAGGACTAGGCCCCAATTTAGTGGGGGTAGCCCCTT
CCAGAGCAATATACTTTGCTGCTTATTCAAACTGCAAGGAAAAGTTGAATGATGTATTTGATCCTGATTC
TACCCAAGTACATATGATTTCAGCTGCAATGGCAGGTTTTACTGCAATCACAGCAACCAACCCCATTTGG
CTTATAAAGACTCGGTTACAGCTTGATGCAAGGAACCGCGGGGAAAGGCGAATGGGTGCTTTTGAATGTG
TTCGTAAAGTGTATCAGACAGATGGACTAAAAGGATTTTATAGGGGCATGTCTGCTTCATATGCTGGTAT
ATCAGAGACTGTTATCCATTTTGTTATTTATGAAAGTATAAAACAAAAACTACTGGAATATAAGACTGCT
TCTACAATGGAAAATGATGAAGAGTCTGTGAAAGAAGCATCAGATTTTGTGGGAATGATGCTAGCTGCTG
CCACCTCAAAAACTTGTGCCACAACTATAGCATATCCACATGTTGTAAGAACAAGACTACGTGAAGAGGG
AACAAAATACAGATCTTTTTTTCAGACTCTATCTTTGCTTGTTCAAGAAGAAGGTTATGGGTCTCTTTAT
CGTGGTCTGACAACTCATCTAGTGAGACAGATTCCAAACACAGCCATTATGATGGCCACCTATGAATTGG
TGGTTTACCTACTCAATGGATAG

Translation (310 aa):
MSQRDTLVHLFAGGCGGTVGAILTCPLEVVKTRLQSSSVTLYISEVQLNTMAGASVNRVVSPGPLHCLKV
ILEKEGPRSLFRGLGPNLVGVAPSRAIYFAAYSNCKEKLNDVFDPDSTQVHMISAAMAGFTAITATNPIW
LIKTRLQLDARNRGERRMGAFECVRKVYQTDGLKGFYRGMSASYAGISETVIHFVIYESIKQKLLEYKTA
STMENDEESVKEASDFVGMMLAAATSKTCATTIAYPHVVRTRLREEGTKYRSFFQTLSLLVQEEGYGSLY
RGLTTHLVRQIPNTAIMMATYELVVYLLNG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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