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Report for CCDS31322.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31322.2 Public Homo sapiens 11 PGGHG 24 110 108 CCDS HistoryNCBI Gene:80162Re-query CCDS DB by CCDS ID:31322.2Re-query CCDS DB by GeneID:80162See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 31322.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 31322.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409548.7 ENSP00000387185.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409548.7Link to Ensembl Protein Viewer:ENSP00000387185.2Re-query CCDS DB by Nucleotide ID:ENST00000409548Re-query CCDS DB by Protein ID:ENSP00000387185
Original member Current member NCBI NM_025092.5 NP_079368.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025092.5Link to Protein Sequence:NP_079368.3Re-query CCDS DB by Nucleotide ID:NM_025092Re-query CCDS DB by Protein ID:NP_079368Link to BLAST:NP_079368.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079368.3 737 Q32M88-1 737 100% 0 0

Chromosomal Locations for CCDS 31322.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 289817 290075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 290390 290600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 290678 291113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 291976 292095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 292546 292677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 292886 292997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 293163 293235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 293366 293502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 293594 293727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 293830 293925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 294099 294196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 294267 294478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 294556 294749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2214 nt):
ATGGAGGACGCCGGCGAGGACCCCACCACGTTTGCTGCCCACTCTCTGCCCAGTGACCCCCGTCTCTTGG
CCACTGTGACCAACGCATACCTGGGCACACGAGTGTTTCACGACACGCTGCACGTGAGCGGCGTGTACAA
TGGGGCTGGCGGGGACACGCACCGGGCCATGCTGCCCAGCCCCCTCAACGTCCGGCTGGAGGCCCCTGCA
GGGATGGGGGAGCAGCTGACCGAGACCTTCGCCCTGGACACCAACACAGGCTCCTTTCTTCACACCCTGG
AGGGCCCCCGCTTCCGGGCCTCCCAGTGCATCTATGCGCATCGCACGCTGCCCCACGTGCTGGCTTTCCG
AGTGTCCATCGCCCGCCTGGCCCCGGGGAGCGGGCCCATCACGCTGCTCCTGCGGTCAGCCTTCTCCCCA
GAAAGCCCAGACCTGGACCTGCATCAGGGTCCTGACTTCCAGGGAGCCCGGTACCTGTATGGCCACACCC
TCACCCCTGAGCAGCCCGGGGGGCCACAGCAAGAGGTACACATGCTGTGGACACCAGCACCCCCAGACCT
GACCCTTGGGGAAGGTGAGGAGGCTAGGACGTGGGACTTCCTGACAGCAGTGGGCGGCAGCCAGGCTGAG
GCTCAGGCCTGCCTCACTGAGGCCCTGCAGCTGCAGGCCAGGGGAGCTCTGTATACGGCTCACGCACAGG
CCTGGGCCCAGCTCTGGGTAGAATGTGGCTTGGACGTGGTGGGGCCCCTGCAGCTGCGCCAGGCCCTGCG
TGGCTCCCTCTACTACCTGCTCAGTGCCCTGCCCCAGCCCAAGGCCCCAGGATACATCTGCCATGGCCTC
AGTCCTGGGGGCCTCTCCAATGGGAGCCGTGAGGAATGCTACTGGGGCCACGTCTTCTGGGACCAGGACC
TCTGGATGTTCCCGAGTATCCTGATGTTCCACCCAGAAGCCGCCAGGGCCATCCTGGAGTACCGCATCCG
CACGCTGGACGGGGCCCTGGAGAACGCCCAGAACCTGGGCTACCAGGGAGCCAAGTTTGCCTGGGAGAGT
GCAGACTCCGGCCTAGAGGTTTGCCCTGAGGACATTTACGGAGTCCAGGAGGTCCACGTCAACGGGGCCG
TGGTGTTGGCCTTCGAGCTGTACTACCATACCACCCAGGACCTGCAGCTATTTCGAGAGGCTGGTGGCTG
GGACGTGGTCAGGGCTGTGGCCGAGTTTTGGTGCAGTCGTGTTGAGTGGAGCCCCAGGGAGGAAAAGTAC
CACCTGAGGGGAGTCATGTCCCCCGACGAGTACCATTCAGGGGTCAACAACTCTGTGTACACCAACGTCC
TGGTCCAGAACAGCCTGCGCTTTGCTGCTGCCCTGGCCCAGGACCTGGGTCTTCCCATCCCCAGCCAGTG
GCTGGCGGTGGCTGACAAGATCAAGGTACCCTTTGACGTGGAGCAGAACTTCCACCCGGAGTTCGATGGG
TATGAGCCTGGAGAGGTGGTGAAGCAGGCAGACGTCGTGCTCCTGGGATACCCAGTCCCCTTCTCCCTGA
GTCCTGATGTTCGCAGGAAAAATCTGGAGATTTACGAGGCTGTGACGTCCCCCCAGGGCCCCGCCATGAC
CTGGAGCATGTTTGCTGTGGGCTGGATGGAGCTGAAGGACGCAGTGCGGGCCCGGGGCCTCCTGGACAGG
AGCTTTGCCAACATGGCTGAACCCTTCAAGGTGTGGACGGAGAATGCAGACGGGTCAGGCGCTGTGAACT
TCCTGACAGGCATGGGGGGCTTCCTGCAGGCGGTGGTCTTCGGGTGCACGGGGTTCAGGGTCACCCGAGC
GGGTGTGACCTTTGACCCTGTGTGTCTGTCGGGGATCTCCAGAGTGAGCGTCTCCGGCATCTTCTACCAG
GGGAACAAGCTCAACTTCTCTTTTTCCGAGGACTCCGTGACCGTGGAGGTCACAGCTCGAGCAGGGCCCT
GGGCTCCTCACCTGGAGGCTGAGCTGTGGCCATCCCAGTCCCGGCTCTCCCTGTTGCCAGGACACAAGGT
CTCCTTTCCCCGCTCGGCTGGCCGGATACAAATGTCACCCCCGAAGCTGCCTGGAAGTTCCAGCTCCGAG
TTCCCTGGGAGGACTTTTTCAGATGTTAGGGACCCGCTCCAGAGCCCCCTCTGGGTCACCCTGGGTTCCT
CCAGCCCCACCGAGTCACTCACTGTGGACCCTGCCTCTGAATAA

Translation (737 aa):
MEDAGEDPTTFAAHSLPSDPRLLATVTNAYLGTRVFHDTLHVSGVYNGAGGDTHRAMLPSPLNVRLEAPA
GMGEQLTETFALDTNTGSFLHTLEGPRFRASQCIYAHRTLPHVLAFRVSIARLAPGSGPITLLLRSAFSP
ESPDLDLHQGPDFQGARYLYGHTLTPEQPGGPQQEVHMLWTPAPPDLTLGEGEEARTWDFLTAVGGSQAE
AQACLTEALQLQARGALYTAHAQAWAQLWVECGLDVVGPLQLRQALRGSLYYLLSALPQPKAPGYICHGL
SPGGLSNGSREECYWGHVFWDQDLWMFPSILMFHPEAARAILEYRIRTLDGALENAQNLGYQGAKFAWES
ADSGLEVCPEDIYGVQEVHVNGAVVLAFELYYHTTQDLQLFREAGGWDVVRAVAEFWCSRVEWSPREEKY
HLRGVMSPDEYHSGVNNSVYTNVLVQNSLRFAAALAQDLGLPIPSQWLAVADKIKVPFDVEQNFHPEFDG
YEPGEVVKQADVVLLGYPVPFSLSPDVRRKNLEIYEAVTSPQGPAMTWSMFAVGWMELKDAVRARGLLDR
SFANMAEPFKVWTENADGSGAVNFLTGMGGFLQAVVFGCTGFRVTRAGVTFDPVCLSGISRVSVSGIFYQ
GNKLNFSFSEDSVTVEVTARAGPWAPHLEAELWPSQSRLSLLPGHKVSFPRSAGRIQMSPPKLPGSSSSE
FPGRTFSDVRDPLQSPLWVTLGSSSPTESLTVDPASE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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