NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS31340.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31340.1 Public Homo sapiens 11 TRPM5 24 110 108 CCDS HistoryNCBI Gene:29850Re-query CCDS DB by CCDS ID:31340.1Re-query CCDS DB by GeneID:29850See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 31340.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000696290.1 ENSP00000512529.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000696290.1Link to Ensembl Protein Viewer:ENSP00000512529.1Re-query CCDS DB by Nucleotide ID:ENST00000696290Re-query CCDS DB by Protein ID:ENSP00000512529
Original member Current member NCBI NM_014555.4 NP_055370.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014555.4Link to Protein Sequence:NP_055370.1Re-query CCDS DB by Nucleotide ID:NM_014555Re-query CCDS DB by Protein ID:NP_055370Link to BLAST:NP_055370.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055370.1 1165 Q9NZQ8-1 1165 100% 0 0

Chromosomal Locations for CCDS 31340.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 2404937 2405043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2405527 2405593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2406019 2406091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2406661 2406793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2407119 2407300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2407759 2407912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2411352 2411526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2411635 2411767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2412135 2412253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2412754 2413012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2413134 2413226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2413476 2413588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2414061 2414206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2414715 2414838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2414907 2415047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2415121 2415471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2415906 2416024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2417727 2417829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2418167 2418358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2418527 2418591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2420222 2420405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2421032 2421198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2422141 2422321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2422920 2423036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3498 nt):
ATGCAGGATGTCCAAGGCCCCCGTCCCGGAAGCCCCGGGGATGCTGAAGACCGGCGGGAGCTGGGCTTGC
ACAGGGGCGAGGTCAACTTTGGAGGGTCTGGGAAGAAGCGAGGCAAGTTTGTACGGGTGCCGAGCGGAGT
GGCCCCGTCTGTGCTCTTTGACCTGCTGCTTGCTGAGTGGCACCTGCCGGCCCCCAACCTGGTGGTGTCC
CTGGTGGGTGAGGAGCAGCCTTTCGCCATGAAGTCCTGGCTGCGGGATGTGCTGCGCAAGGGGCTGGTGA
AGGCGGCTCAGAGCACAGGAGCCTGGATCCTGACCAGTGCCCTCCGCGTGGGCCTGGCCAGGCATGTCGG
GCAGGCCGTGCGCGACCACTCGCTGGCCAGCACGTCCACCAAGGTCCGTGTGGTTGCTGTCGGCATGGCC
TCGCTGGGCCGCGTCCTGCACCGCCGCATTCTGGAGGAGGCCCAGGAGGATTTTCCTGTCCACTACCCTG
AGGATGACGGCGGCAGCCAGGGCCCCCTCTGTTCACTGGACAGCAACCTCTCCCACTTCATCCTGGTGGA
GCCAGGCCCCCCGGGGAAGGGCGATGGGCTGACGGAGCTGCGGCTGAGGCTGGAGAAGCACATCTCGGAG
CAGAGGGCGGGCTACGGGGGCACTGGCAGCATCGAGATCCCTGTCCTCTGCTTGCTGGTCAATGGTGATC
CCAACACCTTGGAGAGGATCTCCAGGGCCGTGGAGCAGGCTGCCCCGTGGCTGATCCTGGTAGGCTCGGG
GGGCATCGCCGATGTGCTTGCTGCCCTAGTGAACCAGCCCCACCTCCTGGTGCCCAAGGTGGCCGAGAAG
CAGTTTAAGGAGAAGTTCCCCAGCAAGCATTTCTCTTGGGAGGACATCGTGCGCTGGACCAAGCTGCTGC
AGAACATCACCTCACACCAGCACCTGCTCACCGTGTATGACTTCGAGCAGGAGGGCTCCGAGGAGCTGGA
CACGGTCATCCTGAAGGCGCTGGTGAAAGCCTGCAAGAGCCACAGCCAGGAGCCTCAGGACTATCTGGAT
GAGCTCAAGCTGGCCGTGGCCTGGGACCGCGTGGACATCGCCAAGAGTGAGATCTTCAATGGGGACGTGG
AGTGGAAGTCCTGTGACCTGGAGGAGGTGATGGTGGACGCCCTGGTCAGCAACAAGCCCGAGTTTGTGCG
CCTCTTTGTGGACAACGGCGCAGACGTGGCCGACTTCCTGACGTATGGGCGGCTGCAGGAGCTCTACCGC
TCCGTGTCACGCAAGAGCCTGCTCTTCGACCTGCTGCAGCGGAAGCAGGAGGAGGCCCGGCTGACGCTGG
CCGGCCTGGGCACCCAGCAGGCCCGGGAGCCACCCGCGGGGCCACCGGCCTTCTCCCTGCACGAGGTCTC
CCGCGTACTCAAGGACTTCCTGCAGGACGCCTGCCGAGGCTTCTACCAGGACGGCCGGCCAGGGGACCGC
AGGAGGGCGGAGAAGGGCCCGGCCAAGCGGCCCACGGGCCAGAAGTGGCTGCTGGACCTGAACCAGAAGA
GCGAGAACCCCTGGCGGGACCTGTTCCTGTGGGCCGTGCTGCAGAACCGCCACGAGATGGCCACCTACTT
CTGGGCCATGGGCCAGGAAGGTGTGGCAGCCGCACTGGCCGCCTGCAAAATCCTCAAAGAGATGTCGCAC
CTGGAGACGGAGGCCGAGGCGGCCCGAGCCACGCGCGAGGCGAAATACGAGCGGCTGGCCCTTGACCTCT
TCTCCGAGTGCTACAGCAACAGTGAGGCCCGCGCCTTCGCCCTGCTGGTGCGCCGGAACCGCTGCTGGAG
CAAGACCACCTGCCTGCACCTGGCCACCGAGGCTGACGCCAAGGCCTTCTTTGCCCACGACGGCGTTCAG
GCCTTCCTGACCAGGATCTGGTGGGGGGACATGGCCGCAGGCACGCCCATCCTGCGGCTGCTAGGAGCCT
TCCTCTGCCCCGCCCTCGTCTATACCAACCTCATCACCTTCAGTGAGGAAGCTCCCCTGAGGACAGGCCT
GGAGGACCTGCAGGACCTGGACAGCCTGGACACGGAGAAGAGCCCGCTGTATGGCCTGCAGAGCCGGGTG
GAGGAGCTGGTGGAGGCGCCGAGGGCTCAGGGTGACCGAGGCCCACGTGCTGTCTTCCTGCTCACACGCT
GGCGGAAATTCTGGGGCGCTCCCGTGACTGTGTTCCTGGGGAACGTGGTCATGTACTTCGCCTTCCTCTT
CCTGTTCACCTACGTCCTGCTGGTGGACTTCAGGCCGCCCCCCCAGGGCCCCTCAGGGCCCGAGGTCACC
CTCTACTTCTGGGTCTTTACGCTGGTGCTGGAGGAAATCCGGCAGGGCTTCTTCACAGACGAGGACACAC
ACCTGGTGAAGAAGTTCACACTGTATGTGGGGGACAACTGGAACAAGTGTGACATGGTGGCCATCTTCCT
GTTCATCGTGGGTGTCACCTGCAGGATGCTGCCGTCGGCGTTTGAGGCTGGCCGCACAGTCCTCGCCATG
GACTTCATGGTGTTCACGCTGCGGCTGATCCATATCTTTGCCATACACAAGCAGCTGGGCCCCAAGATCA
TCGTGGTAGAGCGCATGATGAAGGACGTCTTCTTCTTCCTCTTCTTTCTGAGCGTGTGGCTCGTGGCCTA
CGGTGTCACCACCCAGGCGCTGCTGCACCCCCATGACGGCCGCCTGGAGTGGATCTTCCGCCGGGTGCTC
TACCGGCCCTACCTGCAGATCTTCGGCCAGATCCCACTGGACGAGATTGATGAAGCCCGTGTGAACTGCT
CCACCCACCCACTGCTGCTGGAGGACTCACCATCCTGCCCCAGCCTCTATGCCAACTGGCTGGTCATCCT
CCTGCTGGTCACCTTCCTGTTGGTCACCAATGTGCTGCTCATGAACCTGCTCATCGCCATGTTCAGCTAC
ACGTTCCAGGTGGTGCAGGGCAACGCAGACATGTTCTGGAAGTTCCAGCGCTACAACCTGATTGTGGAGT
ACCACGAGCGCCCCGCCCTGGCCCCGCCCTTCATCCTGCTCAGCCACCTGAGCCTGACGCTCCGCCGGGT
CTTCAAGAAGGAGGCTGAGCACAAGCGGGAGCACCTGGAGAGAGACCTGCCAGACCCCCTGGACCAGAAG
GTCGTCACCTGGGAGACAGTCCAGAAGGAGAACTTCCTGAGCAAGATGGAGAAGCGGAGGAGGGACAGCG
AGGGGGAGGTGCTGCGGAAAACCGCCCACAGAGTGGACTTCATTGCCAAGTACCTCGGGGGTCTGAGAGA
GCAAGAAAAGCGCATCAAGTGTCTGGAGTCACAGATCAACTACTGCTCGGTGCTCGTGTCCTCCGTGGCT
GACGTGCTGGCCCAGGGTGGCGGCCCCCGGAGCTCTCAGCACTGTGGCGAGGGAAGCCAGCTGGTGGCTG
CTGACCACAGAGGTGGTTTAGATGGCTGGGAACAACCCGGGGCTGGCCAGCCTCCCTCGGACACCTGA

Translation (1165 aa):
MQDVQGPRPGSPGDAEDRRELGLHRGEVNFGGSGKKRGKFVRVPSGVAPSVLFDLLLAEWHLPAPNLVVS
LVGEEQPFAMKSWLRDVLRKGLVKAAQSTGAWILTSALRVGLARHVGQAVRDHSLASTSTKVRVVAVGMA
SLGRVLHRRILEEAQEDFPVHYPEDDGGSQGPLCSLDSNLSHFILVEPGPPGKGDGLTELRLRLEKHISE
QRAGYGGTGSIEIPVLCLLVNGDPNTLERISRAVEQAAPWLILVGSGGIADVLAALVNQPHLLVPKVAEK
QFKEKFPSKHFSWEDIVRWTKLLQNITSHQHLLTVYDFEQEGSEELDTVILKALVKACKSHSQEPQDYLD
ELKLAVAWDRVDIAKSEIFNGDVEWKSCDLEEVMVDALVSNKPEFVRLFVDNGADVADFLTYGRLQELYR
SVSRKSLLFDLLQRKQEEARLTLAGLGTQQAREPPAGPPAFSLHEVSRVLKDFLQDACRGFYQDGRPGDR
RRAEKGPAKRPTGQKWLLDLNQKSENPWRDLFLWAVLQNRHEMATYFWAMGQEGVAAALAACKILKEMSH
LETEAEAARATREAKYERLALDLFSECYSNSEARAFALLVRRNRCWSKTTCLHLATEADAKAFFAHDGVQ
AFLTRIWWGDMAAGTPILRLLGAFLCPALVYTNLITFSEEAPLRTGLEDLQDLDSLDTEKSPLYGLQSRV
EELVEAPRAQGDRGPRAVFLLTRWRKFWGAPVTVFLGNVVMYFAFLFLFTYVLLVDFRPPPQGPSGPEVT
LYFWVFTLVLEEIRQGFFTDEDTHLVKKFTLYVGDNWNKCDMVAIFLFIVGVTCRMLPSAFEAGRTVLAM
DFMVFTLRLIHIFAIHKQLGPKIIVVERMMKDVFFFLFFLSVWLVAYGVTTQALLHPHDGRLEWIFRRVL
YRPYLQIFGQIPLDEIDEARVNCSTHPLLLEDSPSCPSLYANWLVILLLVTFLLVTNVLLMNLLIAMFSY
TFQVVQGNADMFWKFQRYNLIVEYHERPALAPPFILLSHLSLTLRRVFKKEAEHKREHLERDLPDPLDQK
VVTWETVQKENFLSKMEKRRRDSEGEVLRKTAHRVDFIAKYLGGLREQEKRIKCLESQINYCSVLVSSVA
DVLAQGGGPRSSQHCGEGSQLVAADHRGGLDGWEQPGAGQPPSDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH