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Report for CCDS31386.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31386.2 Public Homo sapiens 11 OR52H1 24 110 108 CCDS HistoryNCBI Gene:390067Re-query CCDS DB by CCDS ID:31386.2Re-query CCDS DB by GeneID:390067See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 31386.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322653.7 ENSP00000326259.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000322653.7Link to Ensembl Protein Viewer:ENSP00000326259.5Re-query CCDS DB by Nucleotide ID:ENST00000322653Re-query CCDS DB by Protein ID:ENSP00000326259
Original member Current member EBI ENST00000641796.2 ENSP00000493308.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000641796.2Link to Ensembl Protein Viewer:ENSP00000493308.2Re-query CCDS DB by Nucleotide ID:ENST00000641796Re-query CCDS DB by Protein ID:ENSP00000493308
Original member Current member NCBI NM_001005289.5 NP_001005289.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001005289.5Link to Protein Sequence:NP_001005289.2Re-query CCDS DB by Nucleotide ID:NM_001005289Re-query CCDS DB by Protein ID:NP_001005289Link to BLAST:NP_001005289.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005289.2 314 Q8NGJ2 314 100% 0 0

Chromosomal Locations for CCDS 31386.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5544561 5545505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGATCATTTTCAACCTGAGCAGTTACAATCCAGGACCCTTCATTCTGGTAGGGATCCCAGGCCTGGAGC
AATTCCATGTGTGGATTGGAATTCCCTTCTGTATCATCTACATTGTAGCTGTTGTGGGAAACTGCATCCT
TCTCTACCTCATTGTGGTGGAGCATAGTCTTCATGAACCCATGTTCTTCTTTCTCTCCATGCTGGCCATG
ACTGACCTCATCTTGTCCACAGCTGGTGTGCCTAAAGCACTCAGTATCTTTTGGCTAGGGGCTCGCGAAA
TCACATTCCCAGGATGCCTTACACAAATGTTCTTCCTTCACTATAACTTTGTCCTGGATTCAGCCATTCT
GATGGCCATGGCATTTGATCACTATGTAGCTATCTGTTCTCCCTTGAGATATACCACCATCTTGACTCCC
AAGACCATCATCAAGAGTGCTATGGGCATCTCCTTTCGAAGCTTCTGCATCATCCTGCCAGATGTATTCT
TGCTGACATGCCTGCCTTTCTGCAGGACACGCATCATACCCCACACATACTGTGAGCATATAGGTGTTGC
CCAGCTCGCCTGTGCTGATATCTCCATCAACTTCTGGTATGGCTTTTGTGTTCCCATCATGACGGTCATC
TCAGATGTGATTCTCATTGCTGTTTCCTACGCACACATCCTCTGTGCTGTCTTTGGCCTTCCCTCCCAAG
ATGCCTGCCAGAAAGCCCTCGGCACTTGTGGTTCTCATGTCTGTGTCATCCTCATGTTTTATACACCTGC
CTTTTTCTCCATCCTCGCCCATCGCTTTGGACACAATGTCTCTCGCACCTTCCACATCATGTTTGCCAAT
CTCTACATTGTTATCCCACCTGCACTCAACCCCATGGTTTACGGAGTGAAGACCAAGCAGATCAGAGATA
AGGTTATACTTTTGTTTTCTAAGGGTACAGGATGA

Translation (314 aa):
MIIFNLSSYNPGPFILVGIPGLEQFHVWIGIPFCIIYIVAVVGNCILLYLIVVEHSLHEPMFFFLSMLAM
TDLILSTAGVPKALSIFWLGAREITFPGCLTQMFFLHYNFVLDSAILMAMAFDHYVAICSPLRYTTILTP
KTIIKSAMGISFRSFCIILPDVFLLTCLPFCRTRIIPHTYCEHIGVAQLACADISINFWYGFCVPIMTVI
SDVILIAVSYAHILCAVFGLPSQDACQKALGTCGSHVCVILMFYTPAFFSILAHRFGHNVSRTFHIMFAN
LYIVIPPALNPMVYGVKTKQIRDKVILLFSKGTG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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