NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS31694.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31694.1 Public Homo sapiens 11 UBASH3B 24 110 108 CCDS HistoryNCBI Gene:84959Re-query CCDS DB by CCDS ID:31694.1Re-query CCDS DB by GeneID:84959See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31694.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000284273.6 ENSP00000284273.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000284273.6Link to Ensembl Protein Viewer:ENSP00000284273.5Re-query CCDS DB by Nucleotide ID:ENST00000284273Re-query CCDS DB by Protein ID:ENSP00000284273
Original member Current member NCBI NM_032873.5 NP_116262.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032873.5Link to Protein Sequence:NP_116262.2Re-query CCDS DB by Nucleotide ID:NM_032873Re-query CCDS DB by Protein ID:NP_116262Link to BLAST:NP_116262.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116262.2 649 Q8TF42 649 100% 0 0

Chromosomal Locations for CCDS 31694.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 122656050 122656210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 122776219 122776272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 122777024 122777210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 122779497 122779695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 122783053 122783222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 122789100 122789308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 122794702 122794834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 122796156 122796276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 122796911 122797033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 122798942 122799034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 122801188 122801332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 122806410 122806516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 122808067 122808176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 122809749 122809886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1950 nt):
ATGGCTCAGTACGGCCACCCCAGTCCGCTCGGCATGGCTGCGAGAGAGGAGCTGTACAGCAAAGTCACCC
CCCGGAGGAACCGCCAACAGCGCCCCGGCACCATCAAGCATGGATCGGCGCTGGACGTGCTCCTCTCCAT
GGGGTTCCCCAGAGCCCGCGCACAAAAAGCCTTGGCATCCACGGGAGGAAGAAGTGTTCAGGCAGCATGT
GACTGGTTATTCTCCCATGTCGGTGACCCCTTCCTGGATGACCCCCTGCCCCGGGAGTACGTCCTCTACC
TCCGTCCCACCGGCCCCTTAGCACAGAAGCTTTCCGACTTTTGGCAGCAGTCGAAGCAGATCTGCGGGAA
GAACAAGGCACACAACATCTTCCCCCACATCACACTCTGCCAGTTCTTTATGTGCGAGGACAGCAAGGTG
GATGCCCTGGGGGAAGCCCTGCAGACCACGGTCAGTCGCTGGAAATGTAAGTTCTCGGCCCCGCTGCCCC
TGGAGCTCTATACGTCGTCCAACTTCATCGGCCTCTTTGTAAAGGAAGACAGTGCGGAGGTCCTCAAGAA
GTTTGCTGCTGACTTTGCTGCAGAGGCTGCATCCAAAACCGAAGTGCATGTGGAACCTCATAAGAAGCAG
CTACATGTGACCCTGGCTTACCACTTCCAAGCCAGCCACCTACCCACCCTAGAGAAACTGGCCCAGAACA
TTGACGTCAAGCTAGGGTGTGACTGGGTGGCTACCATATTTTCTCGGGATATCCGATTTGCTAACCATGA
GACATTACAGGTCATCTACCCCTATACCCCACAAAATGACGATGAGCTGGAGCTGGTCCCCGGGGACTTC
ATCTTCATGTCTCCAATGGAGCAGACCAGCACCAGCGAGGGTTGGATCTATGGCACGTCCTTAACCACCG
GCTGCTCTGGACTCCTGCCTGAGAATTACATTACCAAGGCTGATGAATGCAGCACCTGGATATTTCATGG
TTCTTATTCAATCTTAAATACATCGTCATCCAACTCTCTCACGTTTGGGGATGGAGTATTGGAGAGGCGG
CCTTATGAGGACCAGGGGCTCGGGGAGACGACTCCTCTTACTATCATCTGCCAGCCCATGCAGCCGCTGA
GGGTCAACAGCCAGCCCGGCCCCCAGAAGCGATGCCTTTTTGTGTGTCGGCATGGTGAGAGGATGGATGT
TGTGTTTGGGAAGTACTGGCTGTCCCAGTGCTTCGATGCCAAAGGCCGCTACATACGCACCAACCTGAAC
ATGCCTCATAGTTTACCTCAGCGGAGTGGTGGTTTCCGAGATTACGAGAAAGATGCTCCCATCACTGTGT
TTGGATGCATGCAAGCAAGACTAGTGGGTGAAGCCTTATTAGAGAGCAATACCATTATCGATCATGTCTA
TTGCTCCCCGTCCCTTCGCTGCGTTCAGACTGCACACAATATCTTGAAAGGTTTACAACAAGAAAATCAC
TTGAAGATCCGTGTAGAGCCCGGCTTATTTGAGTGGACAAAATGGGTTGCTGGGAGCACATTACCTGCAT
GGATACCTCCATCAGAGTTAGCTGCAGCCAACCTGAGTGTTGATACAACCTACAGACCTCACATTCCAAT
CAGCAAATTAGTTGTTTCAGAATCCTATGATACTTATATCAGTAGAAGTTTCCAAGTAACAAAAGAAATA
ATAAGTGAATGTAAAAGTAAAGGAAATAACATCCTGATTGTGGCCCACGCATCTTCCCTTGAAGCGTGTA
CCTGCCAACTTCAGGGCCTGTCACCTCAGAACTCCAAGGACTTCGTACAAATGGTCCGAAAGATCCCATA
TCTGGGATTTTGTTCCTGTGAAGAATTAGGAGAAACTGGAATATGGCAGCTGACAGATCCACCAATCCTT
CCTCTTACCCATGGACCAACTGGGGGCTTCAACTGGAGAGAGACCTTGCTTCAAGAATAA

Translation (649 aa):
MAQYGHPSPLGMAAREELYSKVTPRRNRQQRPGTIKHGSALDVLLSMGFPRARAQKALASTGGRSVQAAC
DWLFSHVGDPFLDDPLPREYVLYLRPTGPLAQKLSDFWQQSKQICGKNKAHNIFPHITLCQFFMCEDSKV
DALGEALQTTVSRWKCKFSAPLPLELYTSSNFIGLFVKEDSAEVLKKFAADFAAEAASKTEVHVEPHKKQ
LHVTLAYHFQASHLPTLEKLAQNIDVKLGCDWVATIFSRDIRFANHETLQVIYPYTPQNDDELELVPGDF
IFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADECSTWIFHGSYSILNTSSSNSLTFGDGVLERR
PYEDQGLGETTPLTIICQPMQPLRVNSQPGPQKRCLFVCRHGERMDVVFGKYWLSQCFDAKGRYIRTNLN
MPHSLPQRSGGFRDYEKDAPITVFGCMQARLVGEALLESNTIIDHVYCSPSLRCVQTAHNILKGLQQENH
LKIRVEPGLFEWTKWVAGSTLPAWIPPSELAAANLSVDTTYRPHIPISKLVVSESYDTYISRSFQVTKEI
ISECKSKGNNILIVAHASSLEACTCQLQGLSPQNSKDFVQMVRKIPYLGFCSCEELGETGIWQLTDPPIL
PLTHGPTGGFNWRETLLQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH