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Report for CCDS31944.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31944.1 Public Homo sapiens 13 IFT88 24 110 108 CCDS HistoryNCBI Gene:8100Re-query CCDS DB by CCDS ID:31944.1Re-query CCDS DB by GeneID:8100See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31944.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319980.10 ENSP00000323580.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000319980.10Link to Ensembl Protein Viewer:ENSP00000323580.6Re-query CCDS DB by Nucleotide ID:ENST00000319980Re-query CCDS DB by Protein ID:ENSP00000323580
Original member Current member NCBI NM_001318493.2 NP_001305422.1 Accepted alive Link to Nucleotide Sequence:NM_001318493.2Link to Protein Sequence:NP_001305422.1Re-query CCDS DB by Nucleotide ID:NM_001318493Re-query CCDS DB by Protein ID:NP_001305422Link to BLAST:NP_001305422.1
Original member Current member NCBI NM_001353565.2 NP_001340494.1 Accepted alive Link to Nucleotide Sequence:NM_001353565.2Link to Protein Sequence:NP_001340494.1Re-query CCDS DB by Nucleotide ID:NM_001353565Re-query CCDS DB by Protein ID:NP_001340494Link to BLAST:NP_001340494.1
Original member Current member NCBI NM_001353566.2 NP_001340495.1 Accepted alive Link to Nucleotide Sequence:NM_001353566.2Link to Protein Sequence:NP_001340495.1Re-query CCDS DB by Nucleotide ID:NM_001353566Re-query CCDS DB by Protein ID:NP_001340495Link to BLAST:NP_001340495.1
Original member Current member NCBI NM_001353567.2 NP_001340496.1 Accepted alive Link to Nucleotide Sequence:NM_001353567.2Link to Protein Sequence:NP_001340496.1Re-query CCDS DB by Nucleotide ID:NM_001353567Re-query CCDS DB by Protein ID:NP_001340496Link to BLAST:NP_001340496.1
Original member Current member NCBI NM_175605.5 NP_783195.2 Accepted alive Link to Nucleotide Sequence:NM_175605.5Link to Protein Sequence:NP_783195.2Re-query CCDS DB by Nucleotide ID:NM_175605Re-query CCDS DB by Protein ID:NP_783195Link to BLAST:NP_783195.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305422.1 833 Q13099-1 833 100% 0 0
NP_001340494.1 833 Q13099-1 833 100% 0 0
NP_001340495.1 833 Q13099-1 833 100% 0 0
NP_001340496.1 833 Q13099-1 833 100% 0 0
NP_783195.2 833 Q13099-1 833 100% 0 0

Chromosomal Locations for CCDS 31944.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 20567977 20567997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20574380 20574475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20582957 20583019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20589811 20589867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20590967 20591020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20591618 20591681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20592335 20592404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20596150 20596240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20597015 20597119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20598651 20598753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20599451 20599565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20601705 20601933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20605035 20605105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20615793 20615879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20625750 20625849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20631016 20631102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20638332 20638518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20641290 20641398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20643455 20643605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20644843 20644958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20653876 20653928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20656365 20656430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20663498 20663604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20670973 20671039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20690705 20690815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20691054 20691175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2502 nt):
ATGAAATTCACAAACACTAAGGTACAAATGATGCAAAATGTGCACCTGGCTCCAGAGACAGATGAAGATG
ATCTTTATTCCGGCTATAATGACTACAATCCAATCTATGATATCGAGGAATTGGAGAATGATGCAGCTTT
TCAGCAAGCTGTGAGGACTAGTCATGGCAGAAGACCTCCAATAACTGCTAAAATATCAAGCACGGCAGTT
ACTAGACCTATAGCTACTGGATATGGGTCCAAGACATCTCTGGCATCATCAATAGGAAGACCAATGACAG
GGGCTATTCAGGATGGAGTTACTAGACCCATGACAGCAGTGAGAGCAGCTGGTTTTACCAAAGCAGCTTT
GAGAGGCTCTGCATTTGACCCCCTTAGTCAGTCAAGGGGCCCTGCTTCCCCTTTGGAAGCCAAGAAAAAA
GATAGCCCAGAGGAAAAAATAAAGCAATTAGAGAAGGAAGTAAATGAGTTGGTAGAAGAAAGCTGTATTG
CCAATAGTTGTGGAGACTTAAAATTGGCCTTAGAAAAGGCAAAAGATGCAGGAAGAAAAGAGAGAGTCCT
GGTGAGACAGCGAGAACAAGTTACAACTCCAGAAAATATCAATTTGGATTTAACTTACTCAGTTCTTTTC
AATTTGGCCAGTCAGTATTCAGTTAATGAAATGTATGCCGAAGCACTTAACACTTATCAAGTTATAGTCA
AAAATAAGATGTTTAGCAATGCAGGAATATTGAAAATGAATATGGGAAATATCTATTTAAAGCAAAGAAA
TTATTCCAAAGCCATTAAATTCTACCGAATGGCATTAGACCAAGTTCCAAGTGTCAATAAGCAAATGAGG
ATTAAAATAATGCAGAATATTGGAGTTACATTTATTCAGGCTGGTCAGTATTCAGATGCTATTAATTCAT
ATGAGCACATAATGAGCATGGCACCAAATCTGAAGGCAGGCTACAACCTAACTATCTGTTATTTTGCTAT
TGGAGACCGAGAAAAAATGAAGAAGGCATTCCAAAAATTGATTACTGTTCCATTAGAAATTGATGAAGAT
AAATATATTTCACCAAGTGATGATCCTCATACTAACTTAGTAACTGAAGCTATAAAAAATGATCACCTCA
GGCAAATGGAACGTGAAAGGAAAGCCATGGCAGAAAAATATATTATGACATCTGCAAAACTCATTGCTCC
TGTAATTGAAACATCTTTTGCTGCAGGTTATGATTGGTGCGTGGAAGTGGTGAAAGCTTCTCAATATGTA
GAGCTAGCCAATGATCTGGAAATAAACAAAGCAGTTACATACTTGAGACAAAAAGACTATAACCAAGCTG
TAGAGATCTTAAAAGTGTTGGAAAAAAAGGACAGTAGAGTGAAAAGTGCAGCTGCAACCAATCTCTCAGC
CCTGTATTATATGGGAAAGGATTTTGCACAAGCCAGCAGCTATGCAGATATAGCTGTGAACTCTGATAGA
TATAATCCAGCAGCTCTTACTAATAAAGGGAATACAGTTTTTGCAAATGGTGATTATGAGAAGGCCGCTG
AATTCTATAAAGAGGCTCTAAGAAATGATTCTTCTTGTACTGAAGCACTTTATAATATTGGCCTTACCTA
TGAGAAACTAAATCGGCTAGATGAGGCTTTGGACTGTTTCCTGAAACTTCACGCAATCCTACGAAACAGT
GCCGAAGTTCTTTACCAGATAGCAAATATATATGAATTAATGGAAAATCCCAGTCAAGCTATTGAATGGC
TAATGCAGGTGGTCAGTGTTATTCCAACCGATCCTCAAGTTTTATCTAAGCTAGGAGAATTATATGATCG
TGAAGGAGATAAATCTCAAGCATTTCAATATTACTATGAGTCATATAGGTATTTTCCTTGTAATATTGAA
GTCATTGAGTGGCTTGGAGCCTATTACATTGACACCCAATTTTGGGAAAAAGCTATTCAGTACTTTGAAA
GAGCTTCTCTTATACAGCCTACACAAGTGAAATGGCAGCTGATGGTAGCTAGTTGTTTCAGAAGAAGTGG
TAACTACCAAAAAGCATTAGATACTTACAAAGATACTCACAGAAAATTTCCAGAAAATGTCGAATGTCTG
CGTTTCTTAGTTCGTCTCTGCACAGATCTTGGATTAAAAGATGCTCAAGAATATGCCAGAAAACTGAAGA
GGTTGGAAAAAATGAAAGAAATAAGGGAACAGCGCATAAAGTCAGGCAGAGATGGCAGTGGGGGCTCCCG
TGGCAAAAGAGAAGGAAGTGCTAGCGGTGATAGTGGCCAGAACTATAGTGCCAGTAGTAAAGGTGAACGA
CTAAGTGCCAGACTCAGAGCTTTACCTGGGACAAATGAACCTTATGAAAGTAGCAGTAACAAAGAAATAG
ATGCCTCCTATGTGGACCCACTTGGCCCTCAAATAGAACGACCAAAAACTGCAGCCAAGAAAAGGATCGA
TGAGGATGATTTTGCTGATGAAGAATTAGGAGATGATTTGCTTCCAGAATAA

Translation (833 aa):
MKFTNTKVQMMQNVHLAPETDEDDLYSGYNDYNPIYDIEELENDAAFQQAVRTSHGRRPPITAKISSTAV
TRPIATGYGSKTSLASSIGRPMTGAIQDGVTRPMTAVRAAGFTKAALRGSAFDPLSQSRGPASPLEAKKK
DSPEEKIKQLEKEVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVRQREQVTTPENINLDLTYSVLF
NLASQYSVNEMYAEALNTYQVIVKNKMFSNAGILKMNMGNIYLKQRNYSKAIKFYRMALDQVPSVNKQMR
IKIMQNIGVTFIQAGQYSDAINSYEHIMSMAPNLKAGYNLTICYFAIGDREKMKKAFQKLITVPLEIDED
KYISPSDDPHTNLVTEAIKNDHLRQMERERKAMAEKYIMTSAKLIAPVIETSFAAGYDWCVEVVKASQYV
ELANDLEINKAVTYLRQKDYNQAVEILKVLEKKDSRVKSAAATNLSALYYMGKDFAQASSYADIAVNSDR
YNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNS
AEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIE
VIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPENVECL
RFLVRLCTDLGLKDAQEYARKLKRLEKMKEIREQRIKSGRDGSGGSRGKREGSASGDSGQNYSASSKGER
LSARLRALPGTNEPYESSSNKEIDASYVDPLGPQIERPKTAAKKRIDEDDFADEELGDDLLPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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