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Report for CCDS32006.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32006.1 Public Homo sapiens 13 NALF1 24 110 108 CCDS HistoryNCBI Gene:728215Re-query CCDS DB by CCDS ID:32006.1Re-query CCDS DB by GeneID:728215See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32006.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375915.4 ENSP00000365080.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375915.4Link to Ensembl Protein Viewer:ENSP00000365080.1Re-query CCDS DB by Nucleotide ID:ENST00000375915Re-query CCDS DB by Protein ID:ENSP00000365080
Original member Current member NCBI NM_001080396.3 NP_001073865.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080396.3Link to Protein Sequence:NP_001073865.1Re-query CCDS DB by Nucleotide ID:NM_001080396Re-query CCDS DB by Protein ID:NP_001073865Link to BLAST:NP_001073865.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073865.1 458 B1AL88 458 100% 0 0

Chromosomal Locations for CCDS 32006.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 107170497 107170786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 107210584 107210755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 107865682 107866596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1377 nt):
ATGACCAGGGGTGCTTGGATGTGTCGGCAGTATGACGACGGCTTAAAAATCTGGTTGGCAGCACCCCGAG
AGAACGAGAAACCGTTCATCGATTCCGAGAGGGCTCAGAAATGGCGACTGTCTCTGGCATCTCTCTTGTT
TTTCACAGTCCTGCTCTCTGATCACTTGTGGTTCTGCGCCGAGGCCAAGCTGACCCGGGCCCGGGACAAG
GAGCACCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGAGGCAGCGGCAGCAGCAGCAGC
AGCAGCGGCGGCAGCAGGAGCCCTCCTGGCCCGCGCTCCTGGCGAGCATGGGGGAGTCCTCGCCCGCCGC
CCAGGCACACAGACTCCTCTCCGCCTCCTCGTCCCCCACCCTGCCCCCCTCCCCGGGAGACGGCGGCGGC
GGCGGCGGCAAGGGCAACCGAGGCAAAGACGACCGGGGCAAGGCTCTTTTTCTAGGAAACTCTGCCAAGC
CCGTGTGGCGCCTGGAGACTTGTTACCCCCAGGGCGCGTCCTCGGGCCAGTGCTTCACGGTGGAGAATGC
GGACGCGGTGTGCGCCAGGAACTGGAGTCGGGGGGCGGCCGGGGGGGACGGGCAGGAGGTGAGGAGCAAG
CATCCCACTCCGCTCTGGAACTTGTCGGATTTTTACCTTTCGTTTTGTAATTCCTACACACTTTGGGAGT
TGTTCTCGGGGTTGTCCAGTCCCAACACTTTGAACTGCAGTCTGGATGTGGTGCTCAAGGAAGGCGGCGA
GATGACCACTTGCAGGCAGTGCGTCGAGGCTTACCAGGACTATGACCACCATGCTCAGGAGAAATACGAA
GAGTTTGAAAGCGTGCTCCACAAATATTTACAGTCGGAGGAGTACTCGGTGAAATCCTGTCCTGAAGACT
GTAAGATTGTCTACAAAGCCTGGCTCTGTTCCCAGTATTTTGAAGTCACACAGTTTAACTGCAGAAAGAC
AATTCCTTGCAAGCAATACTGTTTGGAGGTTCAGACGAGGTGTCCATTTATATTGCCCGACAATGATGAA
GTCATCTACGGAGGCCTCTCCAGTTTCATCTGTACAGGGCTTTATGAAACCTTTCTAACCAATGATGAAC
CAGAATGCTGTGACGTCAGGAGAGAAGAAAAATCAAATAACCCATCCAAAGGGACCGTAGAGAAAAGTGG
CTCCTGTCACAGGACATCGCTCACAGTGTCATCAGCAACAAGACTGTGCAACAGCAGACTCAAGCTGTGT
GTTCTTGTACTGATTCTCTTACACACAGTGCTCACAGCCTCGGCAGCACAGAACACAGCCGGACTGAGCT
TTGGAGGCATCAACACGCTGGAAGAAAACTCAACCAATGAGGAGTAA

Translation (458 aa):
MTRGAWMCRQYDDGLKIWLAAPRENEKPFIDSERAQKWRLSLASLLFFTVLLSDHLWFCAEAKLTRARDK
EHQQQQRQQQQQQQQQRQRQQQQQQRRQQEPSWPALLASMGESSPAAQAHRLLSASSSPTLPPSPGDGGG
GGGKGNRGKDDRGKALFLGNSAKPVWRLETCYPQGASSGQCFTVENADAVCARNWSRGAAGGDGQEVRSK
HPTPLWNLSDFYLSFCNSYTLWELFSGLSSPNTLNCSLDVVLKEGGEMTTCRQCVEAYQDYDHHAQEKYE
EFESVLHKYLQSEEYSVKSCPEDCKIVYKAWLCSQYFEVTQFNCRKTIPCKQYCLEVQTRCPFILPDNDE
VIYGGLSSFICTGLYETFLTNDEPECCDVRREEKSNNPSKGTVEKSGSCHRTSLTVSSATRLCNSRLKLC
VLVLILLHTVLTASAAQNTAGLSFGGINTLEENSTNEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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