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Report for CCDS32434.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32434.2 Public Homo sapiens 16 CFAP119 24 110 108 CCDS HistoryNCBI Gene:90835Re-query CCDS DB by CCDS ID:32434.2Re-query CCDS DB by GeneID:90835See the combined annotation on chromosome 16 in Sequence Viewer

Public Note for CCDS 32434.1
The coding region has been updated to represent an alternate splice pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 32434.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000543610.6 ENSP00000437532.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000543610.6Link to Ensembl Protein Viewer:ENSP00000437532.1Re-query CCDS DB by Nucleotide ID:ENST00000543610Re-query CCDS DB by Protein ID:ENSP00000437532
Original member Current member NCBI NM_001014979.3 NP_001014979.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001014979.3Link to Protein Sequence:NP_001014979.2Re-query CCDS DB by Nucleotide ID:NM_001014979Re-query CCDS DB by Protein ID:NP_001014979Link to BLAST:NP_001014979.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001014979.2 331 A1A4V9-1 331 100% 0 0

Chromosomal Locations for CCDS 32434.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 30757476 30757654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30759012 30759101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30759178 30759247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30759342 30759458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30759654 30759724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30760284 30760453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30760606 30760668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30761198 30761229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30761545 30761748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGCTCAACCGCAAGACCAGCCACTTTTTGGGAATGAGGGTGCAGTCGGAGCTTGAACATCTCTCCGAGC
TGCGGCGGGAAGCGGGGAAGGATCGCAGCTCAGTGCATGGGTCGGCCGCGCGGACGCGTGCGAGTGTGCG
GACTCAGTGGACGACGGCGGCGGCGGCGAAAGCGGATGAAGACCCCGGAGCCAACTTGTTTCCGCCGCCG
CTGCCCCGACCCCGGATCTGCATGTGGAAGTACCTGGACGTCCATTCCATGCACCAGCTGGAGAAGACCA
CCAATGCTGAGATGAGGGAGGTGCTGGCTGAGCTGCTGGAGCTAGGGTGTCCTGAGCAGAGCCTGAGGGA
CGCCATCACCCTGGACCTCTTCTGCCACGCGCTCATTTTCTGCCGCCAGCAGGGCTTCTCACTGGAGCAG
ACGTCAGCGGCTTGTGCCCTGCTCCAGGATCTTCACAAGGCTTGTATTGCAACCCCCTTGGGCAACGTGG
AGGAGTGCTACCGCTACTTCACCAGTGTCCTTTTTTGCCATGGAGTCAGGCGGCCTCCTTTCAGCATCGA
CCTCTTCAAAGAGGAACAGCTGCTGGCCTTGGAAGACTACGTGGTCAACACTTACTTCCGCCACTTCAAG
CTCTATAAATACGTCTTCACACCCCAGGTGCGGCTGGATCTGTCTTTGACTTACATGGGGCTACAGCCAC
CCAAACTGTGGCCAGAGAGTGAGACGGAGAAAGAAGAAAGCAAGGAGATGGAGGAGCAGGCAGTTACCCC
GCAGAAAGAGGAACTAGAGACAGTGGCCCCACCAGAGCCAGAGCCAAGCCACATCCACGTCCTCCGAGCC
TACATCAAGACCCAAGTGAACAAAGAGCTGGAGCAGCTCCAGGGGCTGGTGGAGGAGCGGCTCAAGGCCA
GCGAGGAAAGGCTCAGCAGCAAGTTGACTGCACTAGAGCGGCCCTTCCAGCTACCTCCGGGTAAAGGCAA
GAGCAAGACCAAGTGA

Translation (331 aa):
MLNRKTSHFLGMRVQSELEHLSELRREAGKDRSSVHGSAARTRASVRTQWTTAAAAKADEDPGANLFPPP
LPRPRICMWKYLDVHSMHQLEKTTNAEMREVLAELLELGCPEQSLRDAITLDLFCHALIFCRQQGFSLEQ
TSAACALLQDLHKACIATPLGNVEECYRYFTSVLFCHGVRRPPFSIDLFKEEQLLALEDYVVNTYFRHFK
LYKYVFTPQVRLDLSLTYMGLQPPKLWPESETEKEESKEMEEQAVTPQKEELETVAPPEPEPSHIHVLRA
YIKTQVNKELEQLQGLVEERLKASEERLSSKLTALERPFQLPPGKGKSKTK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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