NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS32637.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32637.2 Public Homo sapiens 17 SOCS7 24 110 108 CCDS HistoryNCBI Gene:30837Re-query CCDS DB by CCDS ID:32637.2Re-query CCDS DB by GeneID:30837See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 32637.1
The coding region has been updated to extend the N-terminus and this extension is supported by conservation data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 32637.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000612932.6 ENSP00000482229.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000612932.6Link to Ensembl Protein Viewer:ENSP00000482229.2Re-query CCDS DB by Nucleotide ID:ENST00000612932Re-query CCDS DB by Protein ID:ENSP00000482229
Original member Current member NCBI NM_014598.4 NP_055413.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014598.4Link to Protein Sequence:NP_055413.2Re-query CCDS DB by Nucleotide ID:NM_014598Re-query CCDS DB by Protein ID:NP_055413Link to BLAST:NP_055413.2

Chromosomal Locations for CCDS 32637.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 38352053 38353032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38361711 38361775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38364752 38364856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38365308 38365409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38366287 38366417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38367882 38368050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38377714 38377842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38395309 38395444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38395848 38395968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1938 nt):
ATGCAGGAGGCCGAGCTCCGGGATGGCGAGGCGGCGGCGGCGGCCGCTTCGTACCGCGTCCTGAGCCGCC
TCCTTGGCTATGGAGAGGCGGCCCCCGAGCCAGGCCCTCCGCCACCGCCCCCGGGCCATGGCCCCCCGCC
GCCACCCTTCCTCGCGCGGCCCGGCCCGCGGGGCTCCCGGCCGCCGCAGCTGATGGTGTTCCGCAACGTG
GGTCGGCCGCCGGAGGAGGAGGACGTGGAGGCGGCCCCGGAGCCGGGACCCTCGGAACTGCTGTGTCCCC
GGCACCGCTGTGCCCTGGACCCCAAGGCCCTGCCGCCGGGCTTGGCGCTCGAGCGGACCTGGGGCCCGGC
GGCTGGACTAGAGGCGCAGTTGGCGGCTCTGGGGCTCGGGCAGCCGGCGGGGCCGGGGGTCAAGACAGTC
GGTGGGGGTTGCTGCCCGTGTCCGTGTCCTCCTCAGCCGCCCCCTCCGCAGCCCCAGCCGCCTGCTGCCG
CCCCGCAGGCCGGGGAGGACCCCACGGAAACGAGCGACGCGCTGCTGGTCCTGGAGGGCTTGGAATCGGA
GGCCGAGAGCCTGGAGACTAACAGCTGCTCGGAAGAGGAGCTCAGCAGCCCGGGTCGCGGAGGAGGAGGG
GGCGGCCGGCTTCTGCTGCAGCCCCCAGGCCCTGAATTACCTCCGGTGCCCTTCCCGCTGCAGGACTTGG
TCCCTCTGGGGCGCCTGAGTAGAGGGGAGCAGCAGCAGCAGCAGCAGCAGCAACCTCCCCCGCCCCCGCC
TCCTCCCGGGCCCCTCCGGCCACTCGCGGGTCCTTCTCGGAAGGGCTCCTTCAAAATCCGCCTCAGTCGC
CTCTTTCGCACCAAGAGCTGCAACGGTGGCTCCGGCGGTGGGGATGGGACCGGCAAGAGGCCTTCTGGAG
AGCTGGCTGCTTCAGCTGCGAGCCTGACAGACATGGGAGGCTCTGCGGGCCGGGAGCTGGACGCGGGGAG
GAAACCCAAGTTGACAAGAACTCAAAGTGCCTTTTCTCCGGTCTCCTTCAGCCCCCTGTTCACAGGTGAA
ACTGTGTCGCTTGTGGATGTGGACATTTCTCAGCGGGGCCTGACCTCTCCACACCCTCCAACTCCCCCTC
CTCCTCCGAGAAGAAGCCTCAGCCTCCTAGATGATATCAGTGGGACGCTGCCTACATCTGTCCTTGTGGC
TCCGATGGGGTCTTCCTTGCAGTCTTTCCCCCTACCTCCGCCTCCTCCACCCCATGCCCCAGATGCATTT
CCCCGGATTGCTCCCATCCGAGCAGCTGAATCCCTGCACAGCCAACCCCCACAGCACCTCCAGTGTCCCC
TCTACCGGCCTGACTCGAGCAGCTTTGCAGCCAGCCTTCGAGAGTTGGAGAAGTGTGGTTGGTATTGGGG
GCCAATGAATTGGGAAGATGCAGAGATGAAGCTGAAAGGGAAACCAGATGGTTCTTTCCTGGTACGAGAC
AGTTCTGATCCTCGTTACATCCTGAGCCTCAGTTTCCGATCACAGGGTATCACCCACCACACTAGAATGG
AGCACTACAGAGGAACCTTCAGCCTGTGGTGTCATCCCAAGTTTGAGGACCGCTGTCAATCTGTTGTAGA
GTTTATTAAGAGAGCCATTATGCACTCCAAGAATGGAAAGTTTCTCTATTTCTTAAGATCCAGGGTTCCA
GGACTGCCACCAACTCCTGTCCAGCTGCTCTATCCAGTGTCCCGATTCAGCAATGTCAAATCCCTCCAGC
ACCTTTGCAGATTCCGGATACGACAGCTCGTCAGGATAGATCACATCCCAGATCTCCCACTGCCTAAACC
TCTGATCTCTTATATCCGAAAGTTCTACTACTATGATCCTCAGGAAGAGGTATACCTGTCTCTAAAGGAA
GCGCAGCTCATTTCCAAACAGAAGCAAGAGGTGGAACCCTCCACGTAG

Translation (645 aa):
MQEAELRDGEAAAAAASYRVLSRLLGYGEAAPEPGPPPPPPGHGPPPPPFLARPGPRGSRPPQLMVFRNV
GRPPEEEDVEAAPEPGPSELLCPRHRCALDPKALPPGLALERTWGPAAGLEAQLAALGLGQPAGPGVKTV
GGGCCPCPCPPQPPPPQPQPPAAAPQAGEDPTETSDALLVLEGLESEAESLETNSCSEEELSSPGRGGGG
GGRLLLQPPGPELPPVPFPLQDLVPLGRLSRGEQQQQQQQQPPPPPPPPGPLRPLAGPSRKGSFKIRLSR
LFRTKSCNGGSGGGDGTGKRPSGELAASAASLTDMGGSAGRELDAGRKPKLTRTQSAFSPVSFSPLFTGE
TVSLVDVDISQRGLTSPHPPTPPPPPRRSLSLLDDISGTLPTSVLVAPMGSSLQSFPLPPPPPPHAPDAF
PRIAPIRAAESLHSQPPQHLQCPLYRPDSSSFAASLRELEKCGWYWGPMNWEDAEMKLKGKPDGSFLVRD
SSDPRYILSLSFRSQGITHHTRMEHYRGTFSLWCHPKFEDRCQSVVEFIKRAIMHSKNGKFLYFLRSRVP
GLPPTPVQLLYPVSRFSNVKSLQHLCRFRIRQLVRIDHIPDLPLPKPLISYIRKFYYYDPQEEVYLSLKE
AQLISKQKQEVEPST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH