NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS32725.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32725.1 Public Homo sapiens 17 USH1G 24 110 108 CCDS HistoryNCBI Gene:124590Re-query CCDS DB by CCDS ID:32725.1Re-query CCDS DB by GeneID:124590See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32725.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000614341.5 ENSP00000480279.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000614341.5Link to Ensembl Protein Viewer:ENSP00000480279.1Re-query CCDS DB by Nucleotide ID:ENST00000614341Re-query CCDS DB by Protein ID:ENSP00000480279
Original member Current member NCBI NM_173477.5 NP_775748.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173477.5Link to Protein Sequence:NP_775748.2Re-query CCDS DB by Nucleotide ID:NM_173477Re-query CCDS DB by Protein ID:NP_775748Link to BLAST:NP_775748.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775748.2 461 Q495M9 461 100% 0 0

Chromosomal Locations for CCDS 32725.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 74918073 74918076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74919454 74920671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74922910 74923073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGAACGACCAGTACCACCGGGCAGCCCGGGATGGCTACCTGGAGCTCCTCAAGGAGGCCACCCGAAAGG
AGCTGAATGCCCCCGACGAGGATGGCATGACCCCCACTCTCTGGGCTGCCTACCATGGCAACCTCGAGTC
GCTGCGTCTCATTGTGAGCCGCGGGGGTGACCCGGACAAGTGTGACATCTGGGGCAACACACCCCTGCAT
CTGGCAGCTTCCAATGGCCACTTGCACTGCCTGTCCTTCCTGGTGTCCTTCGGAGCCAACATCTGGTGCC
TAGACAACGACTACCACACGCCGCTGGACATGGCTGCCATGAAGGGCCACATGGAATGCGTGCGCTACCT
GGACTCCATCGCGGCCAAGCAGAGCAGCCTCAACCCCAAGCTGGTGGGTAAGCTGAAGGACAAGGCCTTC
CGCGAGGCGGAGCGGCGCATCCGCGAGTGCGCCAAGCTGCAGCGGAGGCACCACGAACGCATGGAGCGGC
GATACCGGCGCGAGCTGGCCGAGCGTTCCGACACCCTCAGCTTCTCCAGCCTCACGTCCAGCACCCTGAG
CCGCCGGCTGCAGCATCTGGCGCTGGGCAGCCACCTGCCGTACTCTCAGGCCACGCTGCACGGCACGGCC
AGGGGCAAGACCAAGATGCAGAAGAAGCTGGAGCGGCGCAAGCAGGGCGGCGAAGGCACCTTCAAGGTCT
CCGAGGATGGGCGCAAGAGCGCCCGCTCGCTCTCGGGCCTGCAGCTGGGCAGCGACGTGATGTTCGTGCG
CCAGGGCACCTACGCCAATCCCAAGGAGTGGGGCCGAGCCCCGCTCCGGGACATGTTCCTCTCGGACGAG
GACAGCGTCTCCCGTGCCACGCTGGCGGCCGAGCCTGCCCACTCGGAGGTCAGCACCGACTCAGGCCACG
ACTCCCTGTTTACCCGCCCCGGCCTGGGCACCATGGTGTTCCGCAGAAATTACTTGAGCAGTGGGCTGCA
CGGACTGGGCCGCGAGGATGGGGGTCTGGATGGGGTGGGAGCGCCGCGGGGTCGGCTGCAGAGCTCCCCC
AGCCTGGACGATGACAGCCTGGGCAGTGCCAACAGCCTGCAGGACCGCAGCTGTGGGGAGGAGCTGCCCT
GGGATGAGCTCGATTTAGGCTTGGACGAGGACCTGGAGCCCGAGACTAGCCCGCTGGAGACCTTCCTGGC
CTCTCTGCACATGGAGGACTTTGCCGCCCTCCTGCGGCAGGAGAAGATCGACCTCGAGGCTTTGATGCTG
TGCTCTGACCTCGACCTCCGCAGCATCAGCGTCCCACTGGGGCCCCGAAAGAAGATCTTGGGGGCCGTGA
GGAGGCGGCGGCAGGCGATGGAGCGCCCGCCGGCCCTGGAGGACACAGAGCTATAA

Translation (461 aa):
MNDQYHRAARDGYLELLKEATRKELNAPDEDGMTPTLWAAYHGNLESLRLIVSRGGDPDKCDIWGNTPLH
LAASNGHLHCLSFLVSFGANIWCLDNDYHTPLDMAAMKGHMECVRYLDSIAAKQSSLNPKLVGKLKDKAF
REAERRIRECAKLQRRHHERMERRYRRELAERSDTLSFSSLTSSTLSRRLQHLALGSHLPYSQATLHGTA
RGKTKMQKKLERRKQGGEGTFKVSEDGRKSARSLSGLQLGSDVMFVRQGTYANPKEWGRAPLRDMFLSDE
DSVSRATLAAEPAHSEVSTDSGHDSLFTRPGLGTMVFRRNYLSSGLHGLGREDGGLDGVGAPRGRLQSSP
SLDDDSLGSANSLQDRSCGEELPWDELDLGLDEDLEPETSPLETFLASLHMEDFAALLRQEKIDLEALML
CSDLDLRSISVPLGPRKKILGAVRRRRQAMERPPALEDTEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH