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Report for CCDS32829.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32829.1 Public Homo sapiens 18 HDHD2 24 110 108 CCDS HistoryNCBI Gene:84064Re-query CCDS DB by CCDS ID:32829.1Re-query CCDS DB by GeneID:84064See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32829.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000300605.11 ENSP00000300605.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000300605.11Link to Ensembl Protein Viewer:ENSP00000300605.4Re-query CCDS DB by Nucleotide ID:ENST00000300605Re-query CCDS DB by Protein ID:ENSP00000300605
Original member Current member NCBI NM_032124.5 NP_115500.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032124.5Link to Protein Sequence:NP_115500.1Re-query CCDS DB by Nucleotide ID:NM_032124Re-query CCDS DB by Protein ID:NP_115500Link to BLAST:NP_115500.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115500.1 259 Q9H0R4-1 259 100% 0 0

Chromosomal Locations for CCDS 32829.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 47108682 47108785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47112977 47113040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47115132 47115348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47130244 47130328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47134496 47134704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47136339 47136439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (780 nt):
ATGGCAGCATGCCGTGCATTAAAAGCTGTTTTGGTAGATCTCAGTGGCACACTTCACATTGAAGATGCAG
CTGTGCCAGGCGCACAGGAAGCTCTTAAAAGGTTACGTGGTGCTTCTGTAATCATTAGGTTTGTGACCAA
TACAACCAAAGAGAGCAAGCAAGACCTGTTAGAAAGGTTGAGAAAATTGGAATTTGATATCTCTGAAGAT
GAAATATTCACATCTCTGACTGCAGCCAGAAGTTTACTAGAGCGGAAACAAGTCAGACCCATGCTGCTAG
TTGATGATCGGGCACTACCTGATTTCAAAGGAATACAAACAAGTGATCCTAATGCTGTGGTCATGGGATT
GGCACCAGAACATTTTCATTATCAAATTCTGAATCAAGCATTCCGGTTACTCCTGGATGGAGCACCTCTG
ATAGCAATCCACAAAGCCAGGTATTACAAGAGGAAAGATGGCTTAGCCCTGGGGCCTGGACCATTTGTGA
CTGCTTTAGAGTATGCCACAGATACCAAAGCCACAGTCGTGGGGAAACCAGAGAAGACGTTCTTTTTGGA
AGCATTGCGGGGCACTGGCTGTGAACCTGAGGAGGCTGTCATGATAGGAGATGATTGCAGGGATGATGTT
GGTGGGGCTCAAGATGTCGGCATGCTGGGCATCTTAGTAAAGACTGGGAAATATCGAGCATCAGATGAAG
AAAAAATTAATCCACCTCCTTACTTAACTTGTGAGAGTTTCCCTCATGCTGTGGACCACATTCTGCAGCA
CCTATTGTGA

Translation (259 aa):
MAACRALKAVLVDLSGTLHIEDAAVPGAQEALKRLRGASVIIRFVTNTTKESKQDLLERLRKLEFDISED
EIFTSLTAARSLLERKQVRPMLLVDDRALPDFKGIQTSDPNAVVMGLAPEHFHYQILNQAFRLLLDGAPL
IAIHKARYYKRKDGLALGPGPFVTALEYATDTKATVVGKPEKTFFLEALRGTGCEPEEAVMIGDDCRDDV
GGAQDVGMLGILVKTGKYRASDEEKINPPPYLTCESFPHAVDHILQHLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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