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Report for CCDS32871.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32871.1 Public Homo sapiens 19 GIPC3 24 110 108 CCDS HistoryNCBI Gene:126326Re-query CCDS DB by CCDS ID:32871.1Re-query CCDS DB by GeneID:126326See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32871.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000644452.3 ENSP00000493901.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000644452.3Link to Ensembl Protein Viewer:ENSP00000493901.2Re-query CCDS DB by Nucleotide ID:ENST00000644452Re-query CCDS DB by Protein ID:ENSP00000493901
Original member Current member NCBI NM_133261.3 NP_573568.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_133261.3Link to Protein Sequence:NP_573568.1Re-query CCDS DB by Nucleotide ID:NM_133261Re-query CCDS DB by Protein ID:NP_573568Link to BLAST:NP_573568.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573568.1 312 Q8TF64 312 100% 0 0

Chromosomal Locations for CCDS 32871.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 3585598 3585822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3586495 3586680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3586814 3586994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3589443 3589555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3589831 3589912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3590039 3590190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGAGGGAGCAGCGGCCCGGGAGGCCCGGGGGACCGAGACCCCGCGCGCGTCTGCGCCCCCGCCCGCGC
CCTCGGAGCCCCCGGCCGCGCCCCGCGCCCGCCCGCGCCTCGTCTTCCGCACGCAGCTGGCGCACGGGAG
CCCCACGGGCAAGATCGAGGGCTTCACCAACGTCCGCGAGCTGTACGCCAAGATCGCCGAAGCCTTCGGG
ATCGCGCCCACCGAGATTTTATTCTGCACCCTCAACAGCCACAAAGTGGACATGCAGAAGCTCCTGGGGG
GTCAGATAGGCCTGGAGGACTTCATCTTTGCCCACGTGCGAGGCGAGACCAAGGAGGTGGAGGTCACTAA
GACAGAGGATGCTCTGGGGCTGACCATCACGGACAACGGGGCTGGCTACGCCTTCATCAAGAGAATCAAG
GAAGGCAGTATCATCAACCGGATCGAGGCAGTGTGCGTGGGTGACAGCATCGAAGCCATCAACGACCACT
CCATTGTGGGCTGCCGCCACTACGAGGTGGCCAAGATGCTCCGGGAGCTGCCCAAGTCCCAGCCCTTCAC
CCTGCGCCTGGTGCAGCCCAAGAGGGCCTTCGATATGATTGGCCAGAGAAGTCGGTCCAGCAAATGTCCA
GTAGAGGCGAAAGTGACCAGCGGGAGGGAGACCCTGCGGCTTCGTTCTGGGGGGGCTGCCACAGTGGAGG
AAGCGCCCAGTGAGTTTGAGGAGGAGGCATCTCGGAAGGTTGATGACCTGCTGGAAAGCTACATGGGCAT
TCGGGACCCCGAGCTGGCGTCCACCATGGTGGAGACGTCCAAGAAGACAGCGAGCGCCCAGGAGTTTGCA
CGCTGTTTAGACTCCGTCTTGGGCGAGTTCGCCTTCCCCGACGAGTTTGTGGTGGAAGTGTGGGCCGCCA
TCGGCGAGGCCAGAGAGGCCTGTGGCTAG

Translation (312 aa):
MEGAAAREARGTETPRASAPPPAPSEPPAAPRARPRLVFRTQLAHGSPTGKIEGFTNVRELYAKIAEAFG
IAPTEILFCTLNSHKVDMQKLLGGQIGLEDFIFAHVRGETKEVEVTKTEDALGLTITDNGAGYAFIKRIK
EGSIINRIEAVCVGDSIEAINDHSIVGCRHYEVAKMLRELPKSQPFTLRLVQPKRAFDMIGQRSRSSKCP
VEAKVTSGRETLRLRSGGAATVEEAPSEFEEEASRKVDDLLESYMGIRDPELASTMVETSKKTASAQEFA
RCLDSVLGEFAFPDEFVVEVWAAIGEAREACG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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