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Report for CCDS33094.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33094.1 Public Homo sapiens 19 ZNF468 24 110 108 CCDS HistoryNCBI Gene:90333Re-query CCDS DB by CCDS ID:33094.1Re-query CCDS DB by GeneID:90333See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33094.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000595646.6 ENSP00000470381.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000595646.6Link to Ensembl Protein Viewer:ENSP00000470381.1Re-query CCDS DB by Nucleotide ID:ENST00000595646Re-query CCDS DB by Protein ID:ENSP00000470381
Original member Current member NCBI NM_001008801.2 NP_001008801.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001008801.2Link to Protein Sequence:NP_001008801.1Re-query CCDS DB by Nucleotide ID:NM_001008801Re-query CCDS DB by Protein ID:NP_001008801Link to BLAST:NP_001008801.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008801.1 522 Q5VIY5-1 522 100% 0 0

Chromosomal Locations for CCDS 33094.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 52840725 52842151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52849087 52849213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52854258 52854272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1569 nt):
ATGGCTCTTCCTCAGGGTCTATTGACATTCAGGGACGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAAT
GCCTGGACCCTGCTCAGAGGACTTTATACAGGGACGTGATGCTGGAGAATTATAGGAACCTCGTCTCCCT
GGATATCTCTTCCAAATGCATGTTGAAGACGTTGTCGTCAACAGGGCAAGGCAATACAGAAGTGATCCAC
ACAGGGACATTGCACAGACAAGCAAGTCATCACATTGGAGAATTTTGTTTCCATGAAATTGAGAAAGACA
TTCATGGCTTCGAGTTTCAGTGGAAAGAAGATGAAACAAATGGCCATGCAGCACCCATGACAGAAATCAA
AGAGTTGGCTGGTAGTACAGGCCAACATGATCAAAGGCATGCTGGAAACAAGCGTATTAAAGATCAGCTT
GGATCAAGCTTTCATTTGCATCTGCCTGAACCGCACATATTTCAGTCTGAAGGGAAAATTGGTAATCAAG
TTGAGAAGTCTATCAACAATGCTTCCTCAGTTTCAACATCCCAAAGAATTTGTTGTAGGCCCAAAACCCA
TATTTCTAATAAGTATGGAAATAATTCCCTCCATTCTTCATTACTCACACAAAAATGGGAAGTACACATG
AGAGAAAAATCTTTTGAATGTATACAGAGCTTCAAATCCTTTAATTGCAGCTCACTCTTAAAAAAACATC
AGATAATTCACTTAGAAGAGAAACAATGTAAATGTGATGTATGTGGCAAGGTCTTTAATCAGAAGCGATA
CCTTGCCTGCCATCGTAGATGTCACACTGGTGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTT
GGTCATAATTCATCCCTCTTCATTCACAAAGCGCTTCATACTGGAGAGAAACCTTATGAATGTGAAGAAT
GTGACAAAGTTTTCAGTCGCAAATCACACCTTGAAAGACATAAGAGGATTCATACTGGAGAGAAACCATA
CAAATGTAAGGTTTGTGATGAGGCTTTCGCATATAATTCATATCTGGCAAAACATACTATACTTCACACT
GGAGAGAAACCTTACACATGTAATGAATGTGGCAAAGTTTTTAATCGACTATCAACCCTTGCACGCCATC
ATAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAGTGTGACAAAGTTTTCAGTCGCAAATCACA
CCTTGAAAGACATAGGAGGATTCATAGTGGAGAGAAACCTTACAAATGTGAAGAATGTTGCAAAGTTTTC
AGTCGCAAATCAAACCTGGAAAGACACAGGAGGATTCATACTGGAGAGAAACCATACAAATGTAAGGTTT
GTGACAAGGCTTTCCAGAGGGATTCACACCTGGCACAACATCAGAGAGTTCATACTGGAGAGAAACCTTA
CAAGTGTAATGAGTGTGGCAAGACCTTCGGTCAGACATCATCGCTTATAATCCATCGTAGGCTTCATACT
GGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCAGATGTCATCCCTTGTATACCATC
ATAGGCTTCATAGTGGAGAGAAGCCTTAA

Translation (522 aa):
MALPQGLLTFRDVAIEFSQEEWKCLDPAQRTLYRDVMLENYRNLVSLDISSKCMLKTLSSTGQGNTEVIH
TGTLHRQASHHIGEFCFHEIEKDIHGFEFQWKEDETNGHAAPMTEIKELAGSTGQHDQRHAGNKRIKDQL
GSSFHLHLPEPHIFQSEGKIGNQVEKSINNASSVSTSQRICCRPKTHISNKYGNNSLHSSLLTQKWEVHM
REKSFECIQSFKSFNCSSLLKKHQIIHLEEKQCKCDVCGKVFNQKRYLACHRRCHTGEKPYKCNECGKTF
GHNSSLFIHKALHTGEKPYECEECDKVFSRKSHLERHKRIHTGEKPYKCKVCDEAFAYNSYLAKHTILHT
GEKPYTCNECGKVFNRLSTLARHHRLHTGEKPYKCEECDKVFSRKSHLERHRRIHSGEKPYKCEECCKVF
SRKSNLERHRRIHTGEKPYKCKVCDKAFQRDSHLAQHQRVHTGEKPYKCNECGKTFGQTSSLIIHRRLHT
GEKPYKCNECGKTFSQMSSLVYHHRLHSGEKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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