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Report for CCDS33392.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33392.1 Public Homo sapiens 2 SP140 24 110 108 CCDS HistoryNCBI Gene:11262Re-query CCDS DB by CCDS ID:33392.1Re-query CCDS DB by GeneID:11262See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33392.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373645.3 ENSP00000362749.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373645.3Link to Ensembl Protein Viewer:ENSP00000362749.3Re-query CCDS DB by Nucleotide ID:ENST00000373645Re-query CCDS DB by Protein ID:ENSP00000362749
Original member Current member NCBI NM_001005176.3 NP_001005176.1 Accepted alive Link to Nucleotide Sequence:NM_001005176.3Link to Protein Sequence:NP_001005176.1Re-query CCDS DB by Nucleotide ID:NM_001005176Re-query CCDS DB by Protein ID:NP_001005176Link to BLAST:NP_001005176.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005176.1 172 Q13342-4 172 100% 0 0

Chromosomal Locations for CCDS 33392.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 230225845 230225903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 230237083 230237260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 230238213 230238381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 230238761 230238873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGGCCCAGCAGGGCCAGCAGGGGCAGATGGCAAGTGGAGACAGCAATCTCAACTTCAGGATGGTCGCAG
AGATCCAGAACGTAGAGGGTCAGAACCTGCAGGAGCAGGTTTGCCCTGAGCCCATTTTCAGGTTCTTCAG
AGAAAACAAGGTGGAGATTGCAAGTGCAATAACAAGGCCATTTCCTTTCCTTATGGGCCTCCGAGACCGC
TCCTTCATCTCCGAGCAGATGTATGAACATTTTCAAGAAGCTTTTAGAAACCTGGTCCCAGTGACAAGAG
TGATGTATTGTGTACTCAGTGAACTGGAGAAGACATTTGGCTGGTCACATCTGGAAGCATTGTTCAGCAG
GATTAACCTGATGGCCTATCCTGATTTAAACGAGATTTACAGAAGCTTCCAGAATGAAAATTTATCATCC
AGTGCAGTCCTGTGTCAACTTGTTTCTCCAAACAAAGACTGGAGAAGTCACGAAGAGAGCCTAGCACATA
CTGGTACACTGAGGAGGAGCTGCATGTGA

Translation (172 aa):
MAQQGQQGQMASGDSNLNFRMVAEIQNVEGQNLQEQVCPEPIFRFFRENKVEIASAITRPFPFLMGLRDR
SFISEQMYEHFQEAFRNLVPVTRVMYCVLSELEKTFGWSHLEALFSRINLMAYPDLNEIYRSFQNENLSS
SAVLCQLVSPNKDWRSHEESLAHTGTLRRSCM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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