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Report for CCDS33894.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33894.1 Public Homo sapiens 3 FXR1 24 110 108 CCDS HistoryNCBI Gene:8087Re-query CCDS DB by CCDS ID:33894.1Re-query CCDS DB by GeneID:8087See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33894.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000305586.11 ENSP00000307633.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000305586.11Link to Ensembl Protein Viewer:ENSP00000307633.7Re-query CCDS DB by Nucleotide ID:ENST00000305586Re-query CCDS DB by Protein ID:ENSP00000307633
Original member Current member NCBI NM_001013439.3 NP_001013457.1 Accepted alive Link to Nucleotide Sequence:NM_001013439.3Link to Protein Sequence:NP_001013457.1Re-query CCDS DB by Nucleotide ID:NM_001013439Re-query CCDS DB by Protein ID:NP_001013457Link to BLAST:NP_001013457.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013457.1 536 P51114-3 536 100% 0 0

Chromosomal Locations for CCDS 33894.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 180947922 180947936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180948347 180948495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180948721 180948814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180949227 180949343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180951298 180951468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180953762 180953840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180957819 180957928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180961468 180961554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180962883 180962940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180963028 180963090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180968051 180968254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180970158 180970358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180975313 180975404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180976122 180976292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1611 nt):
ATGATGAAAGGAGAATTTTATGTCATTGAATATGCTGCTTGTGACGCTACTTACAATGAAATAGTCACAT
TTGAACGACTTCGGCCTGTCAATCAAAATAAAACTGTCAAAAAAAATACCTTCTTTAAATGCACAGTGGA
TGTTCCTGAGGATTTGAGAGAGGCGTGTGCTAATGAAAATGCACATAAAGATTTTAAGAAAGCAGTAGGA
GCATGCAGAATTTTTTACCATCCAGAAACAACACAGCTAATGATACTGTCTGCCAGTGAAGCAACTGTGA
AGAGAGTAAACATCTTAAGTGACATGCATTTGCGAAGTATTCGTACGAAGTTGATGCTTATGTCCAGAAA
TGAAGAGGCCACTAAGCATTTAGAATGCACAAAACAACTTGCAGCAGCTTTTCATGAGGAATTTGTTGTG
AGAGAAGATTTAATGGGCCTGGCAATAGGAACACATGGTAGTAACATCCAGCAAGCTAGGAAGGTTCCTG
GAGTTACCGCCATTGAGCTAGATGAAGATACTGGAACATTCAGAATCTACGGAGAGAGTGCTGATGCTGT
AAAAAAGGCTAGAGGTTTCTTGGAATTTGTGGAGGATTTTATTCAGGTTCCTAGGAATCTCGTTGGAAAA
GTAATTGGAAAAAATGGCAAAGTTATTCAAGAAATAGTGGACAAATCTGGTGTGGTTCGAGTGAGAATTG
AAGGGGACAATGAAAATAAATTACCCAGAGAAGACGGTATGGTTCCATTTGTATTTGTTGGCACTAAAGA
AAGCATTGGAAATGTGCAGGTTCTTCTAGAGTATCATATTGCCTATCTAAAGGAAGTAGAACAGCTAAGA
ATGGAACGCCTACAGATTGATGAACAGCTGCGACAGATTGGTTCTAGGTCTTATAGCGGAAGAGGCAGAG
GTCGTCGGGGACCTAATTACACCTCCGGTTATGGTACAAATTCTGAGCTGTCTAACCCCTCTGAAACGGA
ATCTGAGCGTAAAGACGAGCTGAGTGATTGGTCATTGGCAGGAGAAGATGATCGAGACAGCCGACATCAG
CGTGACAGCAGGAGACGCCCAGGAGGAAGAGGCAGAAGTGTTTCAGGGGGTCGAGGTCGTGGTGGACCAC
GTGGTGGCAAATCCTCCATCAGTTCTGTGCTCAAAGATCCAGACAGCAATCCATACAGCTTACTTGATAA
TACAGAATCAGATCAGACTGCAGACACTGATGCCAGCGAATCTCATCACAGTACTAACCGTCGTAGGCGG
TCTCGTAGACGAAGGACTGATGAAGATGCTGTTCTGATGGATGGAATGACTGAATCTGATACAGCTTCAG
TTAATGAAAATGGGCTAGTCACAGTTGCAGATTATATTTCTAGAGCTGAGTCTCAGAGCAGACAAAGAAA
CCTCCCAAGGGAAACTTTGGCTAAAAACAAGAAAGAAATGGCAAAAGATGTGATTGAAGAGCATGGTCCT
TCAGAAAAGGCAATAAACGGCCCAACTAGTGCTTCTGGCGATGACATTTCTAAGCTACAGCGTACTCCAG
GAGAAGAAAAGATTAATACCTTAAAAGAAGAAAACACTCAAGAAGCAGCAGTCCTGAATGGTGTTTCATA
A

Translation (536 aa):
MMKGEFYVIEYAACDATYNEIVTFERLRPVNQNKTVKKNTFFKCTVDVPEDLREACANENAHKDFKKAVG
ACRIFYHPETTQLMILSASEATVKRVNILSDMHLRSIRTKLMLMSRNEEATKHLECTKQLAAAFHEEFVV
REDLMGLAIGTHGSNIQQARKVPGVTAIELDEDTGTFRIYGESADAVKKARGFLEFVEDFIQVPRNLVGK
VIGKNGKVIQEIVDKSGVVRVRIEGDNENKLPREDGMVPFVFVGTKESIGNVQVLLEYHIAYLKEVEQLR
MERLQIDEQLRQIGSRSYSGRGRGRRGPNYTSGYGTNSELSNPSETESERKDELSDWSLAGEDDRDSRHQ
RDSRRRPGGRGRSVSGGRGRGGPRGGKSSISSVLKDPDSNPYSLLDNTESDQTADTDASESHHSTNRRRR
SRRRRTDEDAVLMDGMTESDTASVNENGLVTVADYISRAESQSRQRNLPRETLAKNKKEMAKDVIEEHGP
SEKAINGPTSASGDDISKLQRTPGEEKINTLKEENTQEAAVLNGVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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