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Report for CCDS33914.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33914.1 Public Homo sapiens 3 ATP13A5 24 110 108 CCDS HistoryNCBI Gene:344905Re-query CCDS DB by CCDS ID:33914.1Re-query CCDS DB by GeneID:344905See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33914.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342358.9 ENSP00000341942.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000342358.9Link to Ensembl Protein Viewer:ENSP00000341942.4Re-query CCDS DB by Nucleotide ID:ENST00000342358Re-query CCDS DB by Protein ID:ENSP00000341942
Original member Current member NCBI NM_198505.4 NP_940907.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198505.4Link to Protein Sequence:NP_940907.2Re-query CCDS DB by Nucleotide ID:NM_198505Re-query CCDS DB by Protein ID:NP_940907Link to BLAST:NP_940907.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940907.2 1218 Q4VNC0 1218 100% 0 0

Chromosomal Locations for CCDS 33914.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 193275042 193275302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193276750 193276830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193279366 193279454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193284914 193285116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193289885 193290059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193299131 193299203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193301211 193301307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193305559 193305668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193307327 193307369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193310638 193310717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193311816 193311941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193314033 193314193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193314972 193315096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193318991 193319108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193321681 193321837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193322491 193322574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193324864 193325014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193326996 193327057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193331123 193331311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193333750 193333907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193334929 193335099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193343927 193344055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193345003 193345075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193351067 193351201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193354127 193354196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193362381 193362461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193362567 193362637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193363236 193363382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193364107 193364280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193378663 193378725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3657 nt):
ATGGAAGAGAACAGTAAGAAGGACCATCGGGCTTTGCTCAACCAGGGAGAGGAGGATGAACTGGAGGTGT
TTGGTTACCGGGACCACAATGTACGGAAAGCCTTCTGCCTTGTCGCATCCGTGCTGACCTGTGGGGGCCT
TCTGCTGGTGTTCTACTGGAGACCCCAGTGGAGAGTGTGGGCCAACTGCATCCCATGCCCCTTGCAAGAA
GCAGACACTGTTTTGCTGAGGACAACAGACGAATTTCAAAGATATATGAGGAAGAAGGTATTCTGCCTCT
ACTTATCCACACTGAAGTTTCCTGTAAGCAAGAAGTGGGAAGAATCCCTGGTGGCTGACCGCCACTCTGT
CATAAACCAAGCCTTAATAAAGCCAGAATTAAAACTGCGGTGCATGGAAGTGCAGAAAATCAGGTATGTT
TGGAACGACCTGGAGAAGCGGTTTCAGAAAGTTGGGTTGCTAGAAGACAGCAATTCCTGCTCTGACATCC
ATCAGACATTTGGATTGGGTCTGACCAGTGAAGAGCAAGAGGTCAGAAGATTAGTGTGTGGGCCCAACGC
CATTGAGGTTGAAATCCAACCCATATGGAAGCTGCTTGTTAAACAGGTTTTAAATCCATTCTATGTGTTC
CAAGCCTTCACCCTAACTTTGTGGCTGTCTCAAGGTTACATAGAATACTCTGTGGCCATCATCATTTTGA
CTGTTATCTCCATTGTCTTAAGTGTGTATGATTTGCGACAGCAATCAGTTAAGCTGCATAACCTCGTGGA
GGACCACAACAAAGTCCAGGTTACAATCATTGTAAAAGACAAAGGTTTGGAGGAGCTGGAATCCCGTCTC
TTGGTTCCCGGAGACATTCTTATTCTTCCAGGAAAATTTTCATTGCCATGTGATGCTGTTTTGATTGATG
GAAGCTGCGTGGTGAATGAAGGCATGCTTACAGGAGAAAGTATACCTGTTACAAAGACACCATTGCCCCA
GATGGAGAACACTATGCCTTGGAAATGTCACAGTTTGGAGGATTATAGGAAACACGTCCTTTTCTGTGGA
ACAGAAGTTATCCAGGTCAAGCCCTCTGGGCAGGGGCCTGTACGAGCAGTCGTTTTGCAAACAGGTTACA
ATACAGCCAAAGGGGACTTAGTGAGATCCATCCTGTACCCCCGGCCTCTGAACTTCAAACTATACAGCGA
TGCCTTCAAGTTCATCGTGTTCCTGGCCTGCCTTGGTGTCATGGGTTTTTTCTATGCCCTAGGGGTATAT
ATGTACCATGGAGTTCCTCCAAAAGATACTGTGACCATGGCCCTGATCCTCCTCACCGTGACTGTCCCTC
CAGTGCTGCCAGCTGCCCTGACCATAGGCAACGTGTATGCTCAGAAGAGACTGAAGAAAAAGAAAATCTT
CTGTATCTCCCCACAGAGAATCAACATGTGTGGGCAAATAAACCTCGTGTGCTTTGACAAAACTGGCACT
CTCACTGAAGATGGGCTGGACCTCTGGGGGACTGTCCCTACTGCTGACAACTGCTTCCAGGAAGCCCACA
GCTTTGCCTCAGGCCAGGCTGTGCCATGGAGCCCACTGTGTGCGGCCATGGCCAGCTGCCACTCTCTGAT
CCTTCTCAATGGGACCATCCAGGGAGACCCTCTGGACCTCAAAATGTTTGAGGGCACTGCCTGGAAAATG
GAAGATTGCATTGTAGACTCCTGCAAATTTGGGACGTCAGTTTCAAACATCATAAAACCAGGACCAAAAG
CCAGTAAGAGTCCAGTGGAAGCCATCATCACCTTGTGCCAGTTTCCATTTTCCTCGAGCCTGCAGAGGAT
GTCCGTGATCGCTCAGCTAGCTGGGGAGAATCATTTCCATGTCTACATGAAAGGTGCCCCAGAAATGGTG
GCCAGGTTCTGCAGATCTGAAACAGTGCCCAAGAATTTCCCACAGGAACTGAGGAGTTACACGGTGCAAG
GCTTCCGTGTCATTGCTCTTGCCCACAAAACCTTAAAGATGGGGAATCTTTCAGAAGTCGAGCACTTAGC
CAGAGAAAAAGTGGAGTCAGAGTTAACATTTCTGGGACTTCTCATCATGGAGAATCGCTTGAAAAAAGAA
ACCAAACTGGTCTTGAAGGAACTGAGTGAGGCCCGTATCAGGACTGTGATGATTACAGGTGATAACCTTC
AAACGGCCATTACTGTTGCAAAGAATTCTGAAATGATCCCTCCAGGCAGCCAAGTGATCATTGTTGAGGC
CGATGAACCAGAAGAATTTGTTCCTGCCTCTGTGACCTGGCAGCTGGTGGAGAACCAAGAGACTGGACCT
GGGAAGAAAGAAATCTACATGCATACTGGAAACAGTTCAACCCCTCGTGGGGAAGGAGGAAGCTGTTACC
ATTTTGCAATGAGTGGGAAATCATACCAAGTGATATTTCAGCATTTCAACAGCTTGCTTCCAAAAATTCT
GGTGAATGGAACAGTTTTTGCAAGAATGTCTCCTGGGCAGAAATCAAGCCTTATTGAAGAATTTCAGAAA
TTAAATTATTATGTGGGCATGTGTGGAGATGGAGCTAACGACTGTGGGGCTTTGAAAGCGGCTCATGCAG
GCATTTCATTATCAGAGCAGGAAGCATCTGTGGCATCCCCTTTTACCTCTAAAACAACCAACATCCAGTG
TGTGCCTCATCTCATCAGAGAAGGCCGAGCTGCTCTGGTTTCATCCTTTGGAGTATTTAAATACTTGACC
ATGTACGGCATAATCCAGTTTATCAGTGCATTACTGCTCTATTGGCAACTACAACTCTTTGGAAATTACC
AGTATCTCATGCAAGATGTAGCCATTACTTTGATGGTCTGTTTAACAATGAGTTCAACTCATGCCTACCC
AAAGCTGGCTCCATATAGACCAGCAGGACAGCTCCTTTCTCCCCCTTTACTGCTTTCAATATTTTTGAAT
TCCTGTTTCTCCTGCATTGTGCAGATCAGTGCATTTCTCTATGTGAAGCAGCAGCCTTGGTATTGTGAGG
TCTACCAATACAGTGAGTGTTTTCTGGCCAACCAAAGTAATTTTTCAACAAATGTGAGTTTGGAAAGAAA
CTGGACTGGAAATGCAACTCTGATTCCTGGTTCAATTTTAAGTTTTGAGACCACCACACTGTGGCCCATC
ACCACCATCAACTATATCACAGTAGCATTCATCTTTTCTAAGGGAAAGCCATTTCGAAAACCCATCTATA
CAAACTATATATTTTCATTTCTGCTGCTAGCTGCCTTGGGCCTCACAATTTTCATTCTGTTTTCTGACTT
TCAAGTTATATACCGTGGAATGGAGTTGATCCCAACCATAACATCGTGGAGGGTTTTAATTTTGGTGGTA
GCCCTCACCCAATTCTGTGTGGCTTTCTTTGTAGAGGATTCCATCCTTCAAAATCATGAACTCTGGCTGT
TGATCAAAAGAGAATTTGGATTCTACTCTAAAAGTCAATATAGGACTTGGCAAAAGAAGCTAGCAGAAGA
CTCAACCTGGCCTCCCATAAACAGGACAGATTATTCAGGTGATGGCAAAAATGGATTCTACATCAACGGA
GGCTATGAAAGCCATGAACAGATTCCAAAAAGAAAACTCAAATTGGGAGGCCAACCCACAGAACAGCATT
TCTGGGCCAGGCTGTAA

Translation (1218 aa):
MEENSKKDHRALLNQGEEDELEVFGYRDHNVRKAFCLVASVLTCGGLLLVFYWRPQWRVWANCIPCPLQE
ADTVLLRTTDEFQRYMRKKVFCLYLSTLKFPVSKKWEESLVADRHSVINQALIKPELKLRCMEVQKIRYV
WNDLEKRFQKVGLLEDSNSCSDIHQTFGLGLTSEEQEVRRLVCGPNAIEVEIQPIWKLLVKQVLNPFYVF
QAFTLTLWLSQGYIEYSVAIIILTVISIVLSVYDLRQQSVKLHNLVEDHNKVQVTIIVKDKGLEELESRL
LVPGDILILPGKFSLPCDAVLIDGSCVVNEGMLTGESIPVTKTPLPQMENTMPWKCHSLEDYRKHVLFCG
TEVIQVKPSGQGPVRAVVLQTGYNTAKGDLVRSILYPRPLNFKLYSDAFKFIVFLACLGVMGFFYALGVY
MYHGVPPKDTVTMALILLTVTVPPVLPAALTIGNVYAQKRLKKKKIFCISPQRINMCGQINLVCFDKTGT
LTEDGLDLWGTVPTADNCFQEAHSFASGQAVPWSPLCAAMASCHSLILLNGTIQGDPLDLKMFEGTAWKM
EDCIVDSCKFGTSVSNIIKPGPKASKSPVEAIITLCQFPFSSSLQRMSVIAQLAGENHFHVYMKGAPEMV
ARFCRSETVPKNFPQELRSYTVQGFRVIALAHKTLKMGNLSEVEHLAREKVESELTFLGLLIMENRLKKE
TKLVLKELSEARIRTVMITGDNLQTAITVAKNSEMIPPGSQVIIVEADEPEEFVPASVTWQLVENQETGP
GKKEIYMHTGNSSTPRGEGGSCYHFAMSGKSYQVIFQHFNSLLPKILVNGTVFARMSPGQKSSLIEEFQK
LNYYVGMCGDGANDCGALKAAHAGISLSEQEASVASPFTSKTTNIQCVPHLIREGRAALVSSFGVFKYLT
MYGIIQFISALLLYWQLQLFGNYQYLMQDVAITLMVCLTMSSTHAYPKLAPYRPAGQLLSPPLLLSIFLN
SCFSCIVQISAFLYVKQQPWYCEVYQYSECFLANQSNFSTNVSLERNWTGNATLIPGSILSFETTTLWPI
TTINYITVAFIFSKGKPFRKPIYTNYIFSFLLLAALGLTIFILFSDFQVIYRGMELIPTITSWRVLILVV
ALTQFCVAFFVEDSILQNHELWLLIKREFGFYSKSQYRTWQKKLAEDSTWPPINRTDYSGDGKNGFYING
GYESHEQIPKRKLKLGGQPTEQHFWARL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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