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Report for CCDS34013.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34013.1 Public Homo sapiens 4 PPEF2 24 110 108 CCDS HistoryNCBI Gene:5470Re-query CCDS DB by CCDS ID:34013.1Re-query CCDS DB by GeneID:5470See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34013.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000286719.12 ENSP00000286719.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000286719.12Link to Ensembl Protein Viewer:ENSP00000286719.6Re-query CCDS DB by Nucleotide ID:ENST00000286719Re-query CCDS DB by Protein ID:ENSP00000286719
Original member Current member NCBI NM_006239.3 NP_006230.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006239.3Link to Protein Sequence:NP_006230.2Re-query CCDS DB by Nucleotide ID:NM_006239Re-query CCDS DB by Protein ID:NP_006230Link to BLAST:NP_006230.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006230.2 753 O14830-1 753 100% 0 0

Chromosomal Locations for CCDS 34013.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 75860667 75860920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75864440 75864527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75866189 75866352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75867313 75867419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75872025 75872167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75873127 75873312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75876287 75876673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75882926 75883075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75883166 75883202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75884594 75884760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75886852 75886898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75888214 75888328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75889957 75890132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75891648 75891705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75891851 75891978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75896271 75896325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2262 nt):
ATGGGAAGCGGCACCTCCACCCAACATCATTTTGCTTTCCAGAATGCAGAGAGAGCCTTCAAGGCAGCAG
CCCTGATCCAGAGATGGTACCGGCGCTACGTGGCCCGCCTGGAGATGAGGCGGCGTTGCACCTGGAGCAT
CTTCCAGTCTATAGAATATGCTGGGCAGCAAGACCAAGTCAAGCTCCATGACTTCTTCAGCTATCTCATG
GATCACTTCATCCCCAGCAGCCACAACGACAGGGACTTCCTGACCCGCATATTCACTGAGGACAGATTCG
CCCAGGACTCCGAGATGAAGAAATGCAGTGACTATGAATCCATAGAGGTACCCGACAGTTACACGGGGCC
ACGCCTCTCCTTCCCACTCCTGCCTGACCATGCAACTGCCCTGGTAGAAGCATTCAGACTGAAACAACAG
CTCCATGCTCGCTACGTCTTGAACCTTTTGTATGAAACCAAGAAACATCTGGTACAGCTGCCAAACATCA
ACCGGGTCTCAACCTGTTACAGTGAGGAGATCACAGTGTGTGGAGACTTACATGGCCAATTGGATGACTT
AATCTTTATATTTTATAAGAATGGCCTCCCGTCGCCAGAACGGTCATATGTGTTCAACGGTGACTTTGTG
GATCGAGGCAAGGATTCAGTAGAGATCCTGATGATTCTTTTTGCCTTCATGCTGGTTTACCCCAAAGAGT
TCCATCTTAACAGAGGAAACCATGAGGACCATATGGTGAACTTACGATATGGCTTCACCAAGGAAGTGAT
GAATAAATACAAGGTACACGGGAAGGAAATACTAAGAACCCTGCAAGATGTTTTCTGTTGGCTTCCACTG
GCCACTCTGATAGATGAGAAAGTTCTAATTCTTCATGGTGGGGTGTCAGACATAACTGATCTGGAGCTTT
TGGACAAAATAGAGAGGAGCAAGATAGTTTCCACCATGAGGTGCAAAACGAGACAGAAGAGTGAGAAGCA
GATGGAGGAGAAGAGAAGAGCCAACCAGAAGAGCTCTGCACAGGGACCCATCCCATGGTTTCTCCCCGAA
AGCCGCTCTCTTCCCTCTTCGCCCCTTCGGCTTGGCTCCTACAAGGCCCAGAAAACCAGCAGGTCCTCCA
GCATCCCCTGCAGCGGTTCCCTGGACGGGCGGGAGCTCTCCCGGCAGGTGCGGAGCTCCGTGGAACTGGA
GCTAGAGCGGTGCCGGCAGCAAGCAGGCCTCCTGGTGACCGGAGAGAAAGAGGAGCCCTCCCGCTCAGCC
TCAGAAGCAGACTCTGAAGCCGGAGAGCTGCGGAAGCCCACTCAGGAGGAGTGGAGGCAGGTTGTAGATA
TCCTGTGGAGTGATCCCATGGCTCAAGAGGGCTGCAAGGCCAACACTATTCGAGGAGGAGGCTGTTATTT
TGGGCCTGATGTGACACAACAGTTGCTACAAAAATACAACATGCAATTCCTGATCCGTTCACATGAATGC
AAACCTGAAGGCTATGAATTCTGTCACAACCGCAAGGTATTAACAATCTTTTCTGCCTCCAACTACTATG
AAGTTGGCAGCAACAGAGGGGCCTATGTCAAACTGGGGCCAGCCCTGACCCCACATATTGTGCAGTATCA
AGCTAACAAGGTGACCCACACACTCACCATGAGGCAAAGGATTAGCAGAGTGGAGGAGTCGGCTCTGAGA
GCTCTGAGGGAGAAGCTGTTTGCTCATTCTTCAGATCTTCTCAGTGAATTTAAGAAGCATGATGCAGATA
AAGTCGGTTTAATCACCTTGAGTGACTGGGCAGCAGCGGTGGAGTCTGTGTTGCACCTAGGACTGCCATG
GCGGATGCTGAGGCCACAGCTGGTGAACAGCTCAGCAGACAACATGCTGGAGTACAAGTCTTGGCTGAAG
AACTTGGCCAAGGAACAACTGAGTCGCGAGAACATACAATCAAGTTTGCTGGAAACATTGTATCGAAACC
GATCCAACCTAGAGACCATTTTTAGGATCATAGACAGTGATCATTCAGGGTTCATCTCACTGGACGAGTT
CAGGCAGACCTGGAAGCTGTTCAGCTCTCACATGAATATCGACATTACAGATGACTGCATCTGTGACCTT
GCTCGGAGCATTGATTTCAACAAAGATGGCCACATTGATATCAATGAGTTCCTGGAGGCCTTCCGCCTTG
TGGAGAAATCCTGCCCAGAGGGCGATGCCTCAGAATGCCCACAAGCTACAAATGCTAAAGACAGTGGCTG
CAGCAGTCCAGGTGCACACTAA

Translation (753 aa):
MGSGTSTQHHFAFQNAERAFKAAALIQRWYRRYVARLEMRRRCTWSIFQSIEYAGQQDQVKLHDFFSYLM
DHFIPSSHNDRDFLTRIFTEDRFAQDSEMKKCSDYESIEVPDSYTGPRLSFPLLPDHATALVEAFRLKQQ
LHARYVLNLLYETKKHLVQLPNINRVSTCYSEEITVCGDLHGQLDDLIFIFYKNGLPSPERSYVFNGDFV
DRGKDSVEILMILFAFMLVYPKEFHLNRGNHEDHMVNLRYGFTKEVMNKYKVHGKEILRTLQDVFCWLPL
ATLIDEKVLILHGGVSDITDLELLDKIERSKIVSTMRCKTRQKSEKQMEEKRRANQKSSAQGPIPWFLPE
SRSLPSSPLRLGSYKAQKTSRSSSIPCSGSLDGRELSRQVRSSVELELERCRQQAGLLVTGEKEEPSRSA
SEADSEAGELRKPTQEEWRQVVDILWSDPMAQEGCKANTIRGGGCYFGPDVTQQLLQKYNMQFLIRSHEC
KPEGYEFCHNRKVLTIFSASNYYEVGSNRGAYVKLGPALTPHIVQYQANKVTHTLTMRQRISRVEESALR
ALREKLFAHSSDLLSEFKKHDADKVGLITLSDWAAAVESVLHLGLPWRMLRPQLVNSSADNMLEYKSWLK
NLAKEQLSRENIQSSLLETLYRNRSNLETIFRIIDSDHSGFISLDEFRQTWKLFSSHMNIDITDDCICDL
ARSIDFNKDGHIDINEFLEAFRLVEKSCPEGDASECPQATNAKDSGCSSPGAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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