NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3402.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3402.2 Public Homo sapiens 4 TRMT44 24 110 108 CCDS HistoryNCBI Gene:152992Re-query CCDS DB by CCDS ID:3402.2Re-query CCDS DB by GeneID:152992See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 3402.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data. There are no human full-length transcripts representing this exon combination, but it is supported by the tiled ESTs BX395637.2, BX371487.2, BX348769.2 and BX395636.2 from the same clone, which were used to construct Genoscope accession CR604280.1. The updated N-terminus is also supported by homologous mouse transcripts.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3402.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389737.5 ENSP00000374387.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000389737.5Link to Ensembl Protein Viewer:ENSP00000374387.4Re-query CCDS DB by Nucleotide ID:ENST00000389737Re-query CCDS DB by Protein ID:ENSP00000374387
Original member Current member NCBI NM_152544.3 NP_689757.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152544.3Link to Protein Sequence:NP_689757.2Re-query CCDS DB by Nucleotide ID:NM_152544Re-query CCDS DB by Protein ID:NP_689757Link to BLAST:NP_689757.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689757.2 757 Q8IYL2-1 757 100% 0 0

Chromosomal Locations for CCDS 3402.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 8440823 8441441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8446476 8446590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8449669 8449888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8451960 8452028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8452882 8452989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8454742 8454813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8463985 8464091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8465378 8465561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8467914 8468346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8471084 8471200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8475772 8476001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2274 nt):
ATGGCTGAGGTGGGCCGTACCGGGATCAGCTACCCAGGCGCGCTTCTCCCACAGGGCTTCTGGGCTGCGG
TCGAAGTGTGGCTGGAGAGGCCGCAGGTGGCAAACAAACGGCTTTGCGGCGCCCGCCTGGAGGCCCGCTG
GAGCGCCGCCCTGCCCTGCGCGGAGGCCCGCGGCCCCGGGACTAGCGCAGGCTCGGAGCAGAAGGAGCGG
GGTCCGGGACCCGGCCAGGGTTCCCCCGGAGGGGGCCCGGGTCCCAGGTCGCTATCAGGACCCGAGCAGG
GCACGGCATGTTGCGAACTTGAGGAGGCCCAGGGCCAGTGCCAGCAAGAGGAGGCACAGAGGGAAGCCGC
CTCAGTGCCCCTGAGGGACTCCGGGCACCCCGGCCATGCTGAAGGAAGGGAGGGCGACTTCCCCGCCGCA
GATCTGGATTCGCTTTGGGAGGATTTCTCCCAAAGTCTCGCCCGTGGCAATTCGGAGTTGCTGGCCTTCC
TCACCAGCTCCGGGGCGGGATCGCAGCCAGAGGCGCAGCGTGAGCTCGACGTGGTTCTCAGAACCGTCAT
CCCGAAAACTAGCCCACATTGCCCCCTTACAACTCCCAGGAGGGAAATAGTCGTGCAAGATGTCCTCAAT
GGAACCATAACGTTTTTGCCTTTGGAAGAAGATGATGAGGGGAACCTAAAGGTTAAGATGAGCAATGTGT
ATCAAATTCAGCTCAGTCATAGCAAAGAAGAATGGTTCATATCTGTTTTAATTTTCTGTCCAGAAAGATG
GCATTCAGATGGAATCGTGTATCCCAAACCCACGTGGCTTGGAGAAGAGTTGCTGGCCAAGTTGGCCAAG
TGGTCTGTAGAGAACAAGAAGAGTGACTTTAAAAGCACCCTTTCCCTCATCTCCATTATGAAGTATAGCA
AGGCTTACCAGGAACTTAAAGAGAAGTATAAGGAAATGGTTAAGGTGTGGCCTGAAGTCACTGATCCTGA
GAAGTTCGTGTATGAAGATGTGGCTATCGCAGCATACCTGCTGATTCTATGGGAAGAAGAAAGGGCTGAG
AGGAGACTAACTGCCAGGCAGTCCTTTGTGGACCTGGGATGTGGAAATGGCCTCCTGGTCCACATCCTGA
GCAGTGAGGGGCATCCAGGCAGAGGGATTGATGTCCGAAGAAGAAAAATCTGGGACATGTATGGACCACA
AACTCAGTTAGAGGAAGATGCAATCACACCCAATGATAAGACCCTTTTCCCTGATGTTGATTGGTTAATC
GGTAACCATTCTGATGAACTCACACCATGGATACCTGTCATTGCAGCCAGGTCTTCCTACAATTGCCGCT
TCTTTGTCCTCCCCTGCTGCTTCTTTGACTTCATTGGAAGATACTCCCGGAGGCAGAGTAAGAAGACTCA
GTACCGGGAATACCTTGACTTCATTAAAGAAGTGGGCTTCACCTGTGGGTTTCACGTGGACGAAGACTGC
CTCAGGATTCCTTCAACCAAAAGAGTCTGTCTCGTTGGAAAATCCAGAACATACCCTTCCTCCAGAGAAG
CTTCCGTGGATGAAAAGAGGACTCAGTACATTAAGAGCAGGCGGGGCTGCCCTGTAAGCCCACCTGGCTG
GGAGCTTTCCCCTTCTCCACGCTGGGTTGCTGCTGGCAGTGCTGGTCACTGTGACGGTCAGCAAGCTCTG
GACGCCAGGGTCGGGTGTGTAACCAGGGCCTGGGCCGCTGAGCATGGAGCAGGGCCCCAGGCTGAAGGAC
CCTGGCTACCTGGATTTCATCCCAGAGAAAAGGCTGAGCGTGTGAGGAACTGTGCCGCCCTGCCACGAGA
TTTTATTGACCAAGTGGTTTTGCAAGTAGCGAATTTACTGTTAGGTGGAAAGCAATTAAACACAAGAAGT
TCTCGAAATGGGAGTTTGAAGACCTGGAATGGGGGAGAGAGCCTATCTCTGGCAGAAGTAGCCAACGAGC
TGGACACGGAGACCCTGCGGAGGCTGAAGCGGGAGTGTGGGGGCCTGCAGACGCTGCTCCGGAACAGCCA
CCAGGTGTTCCAAGTTGTGAATGGGAGAGTTCACATCCGCGACTGGCGAGAGGAGACACTGTGGAAGACA
AAGCAACCGGAAGCGAAACAGAGACTGCTCTCTGAAGCCTGCAAAACCCGCCTCTGCTGGTTCTTCATGC
ATCACCCTGATGGCTGCGCTCTGTCCACGGACTGCTGCCCGTTTGCCCATGGGCCTGCGGAGCTGCGGCC
ACCCCGGACCACCCCGAGGAAGAAGATTTCATGA

Translation (757 aa):
MAEVGRTGISYPGALLPQGFWAAVEVWLERPQVANKRLCGARLEARWSAALPCAEARGPGTSAGSEQKER
GPGPGQGSPGGGPGPRSLSGPEQGTACCELEEAQGQCQQEEAQREAASVPLRDSGHPGHAEGREGDFPAA
DLDSLWEDFSQSLARGNSELLAFLTSSGAGSQPEAQRELDVVLRTVIPKTSPHCPLTTPRREIVVQDVLN
GTITFLPLEEDDEGNLKVKMSNVYQIQLSHSKEEWFISVLIFCPERWHSDGIVYPKPTWLGEELLAKLAK
WSVENKKSDFKSTLSLISIMKYSKAYQELKEKYKEMVKVWPEVTDPEKFVYEDVAIAAYLLILWEEERAE
RRLTARQSFVDLGCGNGLLVHILSSEGHPGRGIDVRRRKIWDMYGPQTQLEEDAITPNDKTLFPDVDWLI
GNHSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTCGFHVDEDC
LRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPSPRWVAAGSAGHCDGQQAL
DARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCAALPRDFIDQVVLQVANLLLGGKQLNTRS
SRNGSLKTWNGGESLSLAEVANELDTETLRRLKRECGGLQTLLRNSHQVFQVVNGRVHIRDWREETLWKT
KQPEAKQRLLSEACKTRLCWFFMHHPDGCALSTDCCPFAHGPAELRPPRTTPRKKIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH