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Report for CCDS3408.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3408.1 Public Homo sapiens 4 HS3ST1 24 110 108 CCDS HistoryNCBI Gene:9957Re-query CCDS DB by CCDS ID:3408.1Re-query CCDS DB by GeneID:9957See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3408.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000002596.6 ENSP00000002596.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000002596.6Link to Ensembl Protein Viewer:ENSP00000002596.5Re-query CCDS DB by Nucleotide ID:ENST00000002596Re-query CCDS DB by Protein ID:ENSP00000002596
Original member Current member NCBI NM_005114.4 NP_005105.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005114.4Link to Protein Sequence:NP_005105.1Re-query CCDS DB by Nucleotide ID:NM_005114Re-query CCDS DB by Protein ID:NP_005105Link to BLAST:NP_005105.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005105.1 307 O14792 307 100% 0 0

Chromosomal Locations for CCDS 3408.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 11399082 11400005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGGCCGCGCTGCTCCTGGGCGCGGTGCTGCTGGTGGCCCAGCCCCAGCTAGTGCCTTCCCGCCCCGCCG
AGCTAGGCCAGCAGGAGCTTCTGCGGAAAGCGGGGACCCTCCAGGATGACGTCCGCGATGGCGTGGCCCC
AAACGGCTCTGCCCAGCAGTTGCCGCAGACCATCATCATCGGCGTGCGCAAGGGCGGCACGCGCGCACTG
CTGGAGATGCTCAGCCTGCACCCCGACGTGGCGGCCGCGGAGAACGAGGTCCACTTCTTCGACTGGGAGG
AGCATTACAGCCACGGCTTGGGCTGGTACCTCAGCCAGATGCCCTTCTCCTGGCCACACCAGCTCACAGT
GGAGAAGACCCCCGCGTATTTCACGTCGCCCAAAGTGCCTGAGCGAGTCTACAGCATGAACCCGTCCATC
CGGCTGCTGCTCATCCTGCGAGACCCGTCGGAGCGCGTGCTATCTGACTACACCCAAGTGTTCTACAACC
ACATGCAGAAGCACAAGCCCTACCCGTCCATCGAGGAGTTCCTGGTGCGCGATGGCAGGCTCAATGTGGA
CTACAAGGCCCTCAACCGCAGCCTCTACCACGTGCACATGCAGAACTGGCTGCGCTTTTTCCCGCTGCGC
CACATCCACATTGTGGACGGCGACCGCCTCATCAGGGACCCCTTCCCTGAGATCCAAAAGGTCGAGAGGT
TCCTAAAGCTGTCGCCGCAGATCAATGCTTCGAACTTCTACTTTAACAAAACCAAGGGCTTTTACTGCCT
GCGGGACAGCGGCCGGGACCGCTGCTTACATGAGTCCAAAGGCCGGGCGCACCCCCAAGTCGATCCCAAA
CTACTCAATAAACTGCACGAATATTTTCATGAGCCAAATAAGAAGTTCTTCGAGCTTGTTGGCAGAACAT
TTGACTGGCACTGA

Translation (307 aa):
MAALLLGAVLLVAQPQLVPSRPAELGQQELLRKAGTLQDDVRDGVAPNGSAQQLPQTIIIGVRKGGTRAL
LEMLSLHPDVAAAENEVHFFDWEEHYSHGLGWYLSQMPFSWPHQLTVEKTPAYFTSPKVPERVYSMNPSI
RLLLILRDPSERVLSDYTQVFYNHMQKHKPYPSIEEFLVRDGRLNVDYKALNRSLYHVHMQNWLRFFPLR
HIHIVDGDRLIRDPFPEIQKVERFLKLSPQINASNFYFNKTKGFYCLRDSGRDRCLHESKGRAHPQVDPK
LLNKLHEYFHEPNKKFFELVGRTFDWH


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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