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Report for CCDS34377.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34377.1 Public Homo sapiens 6 TRIM39 24 110 108 CCDS HistoryNCBI Gene:56658Re-query CCDS DB by CCDS ID:34377.1Re-query CCDS DB by GeneID:56658See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34377.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376656.8 ENSP00000365844.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376656.8Link to Ensembl Protein Viewer:ENSP00000365844.4Re-query CCDS DB by Nucleotide ID:ENST00000376656Re-query CCDS DB by Protein ID:ENSP00000365844
Original member Current member EBI ENST00000396547.5 ENSP00000379796.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396547.5Link to Ensembl Protein Viewer:ENSP00000379796.1Re-query CCDS DB by Nucleotide ID:ENST00000396547Re-query CCDS DB by Protein ID:ENSP00000379796
Original member Current member NCBI NM_021253.4 NP_067076.2 Accepted alive Link to Nucleotide Sequence:NM_021253.4Link to Protein Sequence:NP_067076.2Re-query CCDS DB by Nucleotide ID:NM_021253Re-query CCDS DB by Protein ID:NP_067076Link to BLAST:NP_067076.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067076.2 518 Q9HCM9-1 518 100% 0 0

Chromosomal Locations for CCDS 34377.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30329318 30329770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30330781 30330876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30335745 30335975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30339908 30339930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30340272 30340361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30340505 30340620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30341712 30342259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1557 nt):
ATGGCAGAGACAAGTCTGTTAGAGGCTGGGGCCTCTGCAGCCTCTACAGCTGCGGCTTTGGAGAACTTAC
AGGTGGAGGCGAGCTGCTCTGTGTGCCTGGAGTATCTGAAGGAACCTGTCATCATTGAGTGTGGGCACAA
CTTCTGCAAAGCTTGCATCACCCGCTGGTGGGAGGACCTAGAGAGGGACTTCCCTTGTCCTGTCTGTCGA
AAGACATCCCGCTACCGCAGTCTCCGACCTAATCGGCAACTAGGCAGTATGGTGGAAATTGCCAAGCAGC
TCCAGGCCGTCAAGCGGAAGATCCGGGATGAGAGCCTCTGCCCCCAACACCATGAGGCCCTCAGCCTTTT
CTGTTATGAGGACCAGGAGGCTGTATGCTTGATATGTGCAATTTCCCACACCCACCGGGCCCACACCGTT
GTGCCACTGGACGATGCTACACAGGAGTACAAGGAAAAACTGCAGAAGTGTCTGGAGCCCCTGGAACAGA
AGCTGCAGGAGATCACTCGCTGCAAGTCCTCTGAGGAGAAGAAGCCTGGTGAGCTCAAGAGACTAGTGGA
AAGTCGCCGACAGCAGATCTTGAGGGAGTTTGAAGAGCTTCATAGGCGGCTGGATGAAGAGCAGCAGGTG
TTGCTTTCACGACTGGAAGAAGAGGAACAGGACATTCTGCAGCGACTCCGAGAAAATGCTGCTCACCTTG
GGGACAAGCGCCGGGACCTGGCCCACTTGGCTGCCGAGGTGGAGGGCAAGTGCTTACAGTCAGGCTTCGA
GATGCTTAAGGATGTCAAAAGTACCCTGGAAAAGAATATTCCTAGAAAGTTCGGAGGCTCACTCTCAACG
ATCTGTCCACGGGATCATAAGGCTCTCCTTGGATTAGTAAAAGAAATCAACAGATGTGAAAAGGTGAAGA
CCATGGAGGTGACTTCAGTATCCATAGAGCTGGAAAAGAACTTCAGCAATTTTCCCCGACAGTACTTTGC
CCTAAGGAAAATCCTTAAACAGCTAATTGCGGATGTGACCCTGGACCCTGAGACAGCTCATCCTAACCTA
GTCCTGTCAGAGGATCGTAAGAGCGTCAAGTTCGTGGAGACAAGACTCCGGGATCTCCCTGACACACCAA
GGCGTTTCACCTTCTACCCTTGCGTCCTGGCTACTGAGGGTTTCACCTCAGGTCGACACTACTGGGAGGT
GGAGGTGGGCGACAAGACCCACTGGGCAGTGGGTGTATGCCGGGACTCCGTGAGCCGAAAGGGCGAGTTG
ACTCCACTCCCTGAGACTGGCTACTGGCGGGTGCGGCTATGGAATGGGGACAAATATGCAGCCACCACCA
CACCTTTTACCCCTTTGCACATCAAGGTGAAACCCAAGCGGGTAGGCATATTCCTAGACTATGAGGCCGG
CACACTGTCTTTCTACAATGTCACAGACCGCTCTCATATCTACACCTTCACTGATACTTTTACTGAGAAA
CTTTGGCCCCTCTTCTACCCAGGCATCCGGGCTGGACGGAAGAATGCTGCACCACTTACCATCAGGCCCC
CAACAGATTGGGAGTGA

Translation (518 aa):
MAETSLLEAGASAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCR
KTSRYRSLRPNRQLGSMVEIAKQLQAVKRKIRDESLCPQHHEALSLFCYEDQEAVCLICAISHTHRAHTV
VPLDDATQEYKEKLQKCLEPLEQKLQEITRCKSSEEKKPGELKRLVESRRQQILREFEELHRRLDEEQQV
LLSRLEEEEQDILQRLRENAAHLGDKRRDLAHLAAEVEGKCLQSGFEMLKDVKSTLEKNIPRKFGGSLST
ICPRDHKALLGLVKEINRCEKVKTMEVTSVSIELEKNFSNFPRQYFALRKILKQLIADVTLDPETAHPNL
VLSEDRKSVKFVETRLRDLPDTPRRFTFYPCVLATEGFTSGRHYWEVEVGDKTHWAVGVCRDSVSRKGEL
TPLPETGYWRVRLWNGDKYAATTTPFTPLHIKVKPKRVGIFLDYEAGTLSFYNVTDRSHIYTFTDTFTEK
LWPLFYPGIRAGRKNAAPLTIRPPTDWE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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