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Report for CCDS34422.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34422.1 Public Homo sapiens 6 TSBP1 24 110 108 CCDS HistoryNCBI Gene:10665Re-query CCDS DB by CCDS ID:34422.1Re-query CCDS DB by GeneID:10665See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34422.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000447241.6 ENSP00000415517.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000447241.6Link to Ensembl Protein Viewer:ENSP00000415517.2Re-query CCDS DB by Nucleotide ID:ENST00000447241Re-query CCDS DB by Protein ID:ENSP00000415517
Original member Current member NCBI NM_006781.5 NP_006772.3 Accepted alive Link to Nucleotide Sequence:NM_006781.5Link to Protein Sequence:NP_006772.3Re-query CCDS DB by Nucleotide ID:NM_006781Re-query CCDS DB by Protein ID:NP_006772Link to BLAST:NP_006772.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006772.3 563 Q5SRN2-1 563 100% 0 0

Chromosomal Locations for CCDS 34422.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 32292981 32294035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32299922 32299936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32300680 32300700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32302609 32302629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32322486 32322506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32323117 32323137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32323591 32323614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32330589 32330609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32332034 32332054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32335437 32335457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32335912 32335932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32336615 32336635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32338979 32338999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32339600 32339638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32349740 32349829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32355124 32355144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32355649 32355669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32366167 32366187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32366273 32366302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32367925 32367957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32368782 32368814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32369897 32369983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32371694 32371706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1692 nt):
ATGACAGTCTTGGAAATAACTTTGGCTGTCATCCTGACTCTACTGGGACTTGCCATCCTGGCTATTTTGT
TAACAAGATGGGCACGATGTAAGCAAAGTGAAATGTATATCTCCAGATACAGTTCAGAACAAAGTGCTAG
ACTTCTGGACTATGAGGATGGTAGAGGATCCCGACATGCATATTCAACACAAAGTGACACTTCATATGAT
AACCGAGAGAGATCCAAAAGAGATTACACACCATCAACCAACTCTCTAGTGTCTATGGCATCTAAGTTCT
CCCTGGGACAAACAGAACTCATTCTTCTTTTGATGTGTTTTATTTTAGCACTGTCTCGATCAAGTATTGG
TAGTATAAAATGTTTACAAACAACTGAAGAACCTCCTTCCAGAACTGCAGGAGCCATGATGCAATTCACA
GCCCCTATTCCCGGAGCTACAGGACCTATCAAGCTCTCTCAAAAAACCATTGTGCAAACTCCAGGACCTA
TTGTACAATATCCTGGATCCAATGCTGGTCCACCTTCAGCACCCCGCGGTCCACCCATGGCACCCATAAT
AATTTCACAGAGAACCGCAAGAATACCTCAAGTTCACACTATGGACAGTTCTGGAAAAATCACACTGACT
CCTGTGGTTATATTAACAGGTTACATGGATGAAGAACTTGCAAAAAAATCTTGTTCCAAAATCCAGATTC
TAAAATGTGGAGGCACTGCAAGGTCTCAGAATAGCCGAGAAGAAAACAAGGAAGCACTAAAGAATGACAT
CATATTTACGAATTCTGTAGAATCCTTGAAATCAGCACACATAAAGGAGCCAGAAAGAGAAGGAAAAGGC
ACTGATTTAGAGAAAGACAAAATAGGAATGGAGGTCAAGGTAGACAGTGACGCTGGAATACCAAAAAGAC
AGGAAACCCAACTAAAAATCAGTGAGATGAGTATACCACAAGGACAGGGAGCCCAAATAAAGAAAAGTGT
GTCAGATGTACCAAGAGGACAGGAGTCCCAAGTAAAGAAGAGTGAGTCAGGTGTCCCAAAAGGACAAGAA
GCCCAAGTAACGAAGAGTGGGTTGGTTGTACTGAAAGGACAGGAAGCCCAGGTAGAGAAGAGTGAGATGG
GTGTGCCAAGAAGACAGGAATCCCAAGTAAAGAAGAGTCAGTCTGGTGTCTCAAAGGGACAGGAAGCCCA
GGTAAAGAAGAGGGAGTCAGTTGTACTGAAAGGACAGGAAGCCCAGGTAGAGAAGAGTGAGTTGAAGGTA
CCAAAAGGACAAGAAGGCCAAGTAGAGAAGACTGAGGCAGATGTGCCAAAGGAACAAGAGGTCCAAGAAA
AGAAGAGTGAGGCAGGTGTACTGAAAGGACCAGAATCCCAAGTAAAGAACACTGAGGTGAGTGTACCAGA
AACACTGGAATCCCAAGTAAAGAAGAGTGAGTCAGGTGTACTAAAAGGACAGGAAGCCCAAGAAAAGAAG
GAGAGTTTTGAGGATAAAGGAAATAATGATAAAGAAAAGGAGAGAGATGCAGAGAAAGATCCAAATAAAA
AAGAAAAAGGTGACAAAAACACAAAAGGTGACAAAGGAAAGGACAAAGTTAAAGGAAAGAGAGAATCAGA
AATCAATGGTGAAAAATCAAAAGGCTCGAAAAGGGCGAAGGCAAATACAGGAAGGAAGTACAACAAAAAA
GTGGAAGAGTAA

Translation (563 aa):
MTVLEITLAVILTLLGLAILAILLTRWARCKQSEMYISRYSSEQSARLLDYEDGRGSRHAYSTQSDTSYD
NRERSKRDYTPSTNSLVSMASKFSLGQTELILLLMCFILALSRSSIGSIKCLQTTEEPPSRTAGAMMQFT
APIPGATGPIKLSQKTIVQTPGPIVQYPGSNAGPPSAPRGPPMAPIIISQRTARIPQVHTMDSSGKITLT
PVVILTGYMDEELAKKSCSKIQILKCGGTARSQNSREENKEALKNDIIFTNSVESLKSAHIKEPEREGKG
TDLEKDKIGMEVKVDSDAGIPKRQETQLKISEMSIPQGQGAQIKKSVSDVPRGQESQVKKSESGVPKGQE
AQVTKSGLVVLKGQEAQVEKSEMGVPRRQESQVKKSQSGVSKGQEAQVKKRESVVLKGQEAQVEKSELKV
PKGQEGQVEKTEADVPKEQEVQEKKSEAGVLKGPESQVKNTEVSVPETLESQVKKSESGVLKGQEAQEKK
ESFEDKGNNDKEKERDAEKDPNKKEKGDKNTKGDKGKDKVKGKRESEINGEKSKGSKRAKANTGRKYNKK
VEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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