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Report for CCDS34463.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34463.2 Public Homo sapiens 6 NFKBIE 24 110 108 CCDS HistoryNCBI Gene:4794Re-query CCDS DB by CCDS ID:34463.2Re-query CCDS DB by GeneID:4794See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 34463.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000619360.6 ENSP00000480216.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000619360.6Link to Ensembl Protein Viewer:ENSP00000480216.1Re-query CCDS DB by Nucleotide ID:ENST00000619360Re-query CCDS DB by Protein ID:ENSP00000480216
Original member Current member NCBI NM_004556.3 NP_004547.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004556.3Link to Protein Sequence:NP_004547.3Re-query CCDS DB by Nucleotide ID:NM_004556Re-query CCDS DB by Protein ID:NP_004547Link to BLAST:NP_004547.3

Chromosomal Locations for CCDS 34463.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 44259219 44259284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44260043 44260282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44260451 44260539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44261626 44261848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44262560 44262662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44264982 44265346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGTCGGAGGCGCGGAAGGGGCCGGACGAGGCGGAGGAGAGCCAGTACGACTCTGGCATTGAGTCTCTGC
GCTCTCTGCGCTCCCTACCCGAGTCCACCTCGGCTCCAGCCTCCGGGCCCTCGGACGGCAGCCCCCAGCC
CTGCACCCATCCTCCGGGACCCGTCAAGGAACCACAGGAGAAGGAAGACGCGGATGGGGAGCGGGCTGAT
TCCACCTATGGCTCCTCCTCGCTCACCTACACCCTGTCCTTGCTGGGGGGCCCCGAGGCTGAGGACCCGG
CCCCACGCCTGCCACTCCCCCACGTGGGGGCGCTGAGCCCTCAGCAGCTGGAAGCACTCACTTACATCTC
CGAGGACGGAGACACGCTGGTCCACCTGGCAGTGATTCATGAGGCCCCAGCGGTGCTGCTCTGTTGCCTG
GCTTTGCTGCCCCAGGAGGTCCTGGACATTCAAAATAACCTTTACCAGACAGCACTCCATCTGGCTGTAC
ATCTGGACCAACCGGGCGCAGTTCGGGCACTGGTGCTGAAGGGGGCCAGCCGGGCACTACAGGACCGGCA
TGGTGACACAGCCCTTCATGTGGCCTGCCAGCGCCAGCACTTGGCCTGTGCCCGCTGCCTGCTGGAAGGG
CGGCCAGAGCCAGGCAGAGGAACATCTCACTCTCTGGACCTCCAGCTGCAAAACTGGCAAGGTCTGGCTT
GTCTCCACATTGCCACCCTTCAGAAGAACCAACCACTCATGGAATTGCTGCTTCGGAATGGAGCTGACAT
TGATGTGCAGGAGGGCACCAGTGGTAAGACAGCGCTGCACCTGGCTGTGGAAACCCAAGAGCGGGGCCTG
GTACAGTTCCTGCTCCAGGCTGGTGCCCAGGTAGATGCCCGCATGCTGAACGGGTGCACACCCCTGCACC
TGGCAGCTGGCCGGGGTCTCATGGGCATCTCATCCACTCTGTGCAAGGCGGGTGCTGACTCCCTGCTGCG
GAATGTGGAGGATGAGACGCCCCAGGACCTGACTGAGGAATCCCTTGTCCTTTTGCCCTTTGATGACCTG
AAGATCTCAGGGAAACTGCTGCTGTGTACCGACTGA

Translation (361 aa):
MSEARKGPDEAEESQYDSGIESLRSLRSLPESTSAPASGPSDGSPQPCTHPPGPVKEPQEKEDADGERAD
STYGSSSLTYTLSLLGGPEAEDPAPRLPLPHVGALSPQQLEALTYISEDGDTLVHLAVIHEAPAVLLCCL
ALLPQEVLDIQNNLYQTALHLAVHLDQPGAVRALVLKGASRALQDRHGDTALHVACQRQHLACARCLLEG
RPEPGRGTSHSLDLQLQNWQGLACLHIATLQKNQPLMELLLRNGADIDVQEGTSGKTALHLAVETQERGL
VQFLLQAGAQVDARMLNGCTPLHLAAGRGLMGISSTLCKAGADSLLRNVEDETPQDLTEESLVLLPFDDL
KISGKLLLCTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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