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Report for CCDS34564.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34564.1 Public Homo sapiens 6 SOD2 24 110 108 CCDS HistoryNCBI Gene:6648Re-query CCDS DB by CCDS ID:34564.1Re-query CCDS DB by GeneID:6648See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34564.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337404.8 ENSP00000337127.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000337404.8Link to Ensembl Protein Viewer:ENSP00000337127.4Re-query CCDS DB by Nucleotide ID:ENST00000337404Re-query CCDS DB by Protein ID:ENSP00000337127
Original member Current member EBI ENST00000367054.6 ENSP00000356021.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367054.6Link to Ensembl Protein Viewer:ENSP00000356021.2Re-query CCDS DB by Nucleotide ID:ENST00000367054Re-query CCDS DB by Protein ID:ENSP00000356021
Original member Current member NCBI NM_001024466.3 NP_001019637.1 Accepted alive Link to Nucleotide Sequence:NM_001024466.3Link to Protein Sequence:NP_001019637.1Re-query CCDS DB by Nucleotide ID:NM_001024466Re-query CCDS DB by Protein ID:NP_001019637Link to BLAST:NP_001019637.1
Original member Current member NCBI NM_001322814.2 NP_001309743.1 Accepted alive Link to Nucleotide Sequence:NM_001322814.2Link to Protein Sequence:NP_001309743.1Re-query CCDS DB by Nucleotide ID:NM_001322814Re-query CCDS DB by Protein ID:NP_001309743Link to BLAST:NP_001309743.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019637.1 183 P04179-2 183 100% 0 0
NP_001309743.1 183 P04179-2 183 100% 0 0

Chromosomal Locations for CCDS 34564.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 159682493 159682638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159684854 159685033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159692661 159692863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159693145 159693167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (552 nt):
ATGTTGAGCCGGGCAGTGTGCGGCACCAGCAGGCAGCTGGCTCCGGTTTTGGGGTATCTGGGCTCCAGGC
AGAAGCACAGCCTCCCCGACCTGCCCTACGACTACGGCGCCCTGGAACCTCACATCAACGCGCAGATCAT
GCAGCTGCACCACAGCAAGCACCACGCGGCCTACGTGAACAACCTGAACGTCACCGAGGAGAAGTACCAG
GAGGCGTTGGCCAAGGGGGAGTTGCTGGAAGCCATCAAACGTGACTTTGGTTCCTTTGACAAGTTTAAGG
AGAAGCTGACGGCTGCATCTGTTGGTGTCCAAGGCTCAGGTTGGGGTTGGCTTGGTTTCAATAAGGAACG
GGGACACTTACAAATTGCTGCTTGTCCAAATCAGGATCCACTGCAAGGAACAACAGGCCTTATTCCACTG
CTGGGGATTGATGTGTGGGAGCACGCTTACTACCTTCAGTATAAAAATGTCAGGCCTGATTATCTAAAAG
CTATTTGGAATGTAATCAACTGGGAGAATGTAACTGAAAGATACATGGCTTGCAAAAAGTAA

Translation (183 aa):
MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQ
EALAKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPL
LGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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