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Report for CCDS35.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35.1 Public Homo sapiens 1 TMEM52 24 110 108 CCDS HistoryNCBI Gene:339456Re-query CCDS DB by CCDS ID:35.1Re-query CCDS DB by GeneID:339456See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310991.8 ENSP00000311122.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000310991.8Link to Ensembl Protein Viewer:ENSP00000311122.3Re-query CCDS DB by Nucleotide ID:ENST00000310991Re-query CCDS DB by Protein ID:ENSP00000311122
Original member Current member NCBI NM_178545.4 NP_848640.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178545.4Link to Protein Sequence:NP_848640.1Re-query CCDS DB by Nucleotide ID:NM_178545Re-query CCDS DB by Protein ID:NP_848640Link to BLAST:NP_848640.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848640.1 209 Q8NDY8-1 209 100% 0 0

Chromosomal Locations for CCDS 35.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 1917882 1918162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1918253 1918431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1918893 1918934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1919045 1919088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1919182 1919265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (630 nt):
ATGGCCCGGGGGCCGCTGGCCGCCCGCGGACTGCGGCTGCTGCTGCCGCTCCTGCCGCTCCTGCCGCTCC
TGCCGCTGCCGCAGGTGGCGCTGGGCTTCGCGGACGGCAGCTGCGACCCCTCGGACCAGTGCCCGCCCCA
GGCCCGCTGGAGCAGCCTGTGGCACGTGGGGCTCATCCTGCTGGCGGTCCTCCTGCTTCTGCTGTGTGGT
GTCACAGCTGGTTGTGTCCGGTTCTGCTGCCTCCGGAAGCAGGCACAGGCCCAGCCACATCTGCCACCAG
CACGGCAGCCCTGCGACGTGGCAGTCATCCCTATGGACAGTGACAGCCCTGTACACAGCACTGTGACCTC
CTACAGCTCCGTGCAGTACCCACTGGGCATGCGGTTGCCCCTGCCCTTTGGGGAGCTGGACCTGGACTCC
ATGGCTCCTCCTGCCTACAGCCTGTACACCCCGGAGCCTCCACCCTCCTACGATGAAGCTGTCAAGATGG
CCAAGCCCAGAGAGGAAGGACCAGCACTCTCCCAGAAACCCAGCCCTCTCCTTGGGGCCTCGGGCCTAGA
GACCACTCCAGTGCCCCAGGAGTCGGGCCCCAATACTCAACTACCACCTTGTAGCCCTGGTGCCCCTTGA

Translation (209 aa):
MARGPLAARGLRLLLPLLPLLPLLPLPQVALGFADGSCDPSDQCPPQARWSSLWHVGLILLAVLLLLLCG
VTAGCVRFCCLRKQAQAQPHLPPARQPCDVAVIPMDSDSPVHSTVTSYSSVQYPLGMRLPLPFGELDLDS
MAPPAYSLYTPEPPPSYDEAVKMAKPREEGPALSQKPSPLLGASGLETTPVPQESGPNTQLPPCSPGAP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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