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Report for CCDS35008.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35008.1 Public Homo sapiens 9 RUSC2 24 110 108 CCDS HistoryNCBI Gene:9853Re-query CCDS DB by CCDS ID:35008.1Re-query CCDS DB by GeneID:9853See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35008.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361226.8 ENSP00000355177.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361226.8Link to Ensembl Protein Viewer:ENSP00000355177.3Re-query CCDS DB by Nucleotide ID:ENST00000361226Re-query CCDS DB by Protein ID:ENSP00000355177
Original member Current member EBI ENST00000455600.1 ENSP00000393922.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000455600.1Link to Ensembl Protein Viewer:ENSP00000393922.1Re-query CCDS DB by Nucleotide ID:ENST00000455600Re-query CCDS DB by Protein ID:ENSP00000393922
Original member Current member NCBI NM_001135999.2 NP_001129471.2 Accepted alive Link to Nucleotide Sequence:NM_001135999.2Link to Protein Sequence:NP_001129471.2Re-query CCDS DB by Nucleotide ID:NM_001135999Re-query CCDS DB by Protein ID:NP_001129471Link to BLAST:NP_001129471.2
Original member Current member NCBI NM_014806.5 NP_055621.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014806.5Link to Protein Sequence:NP_055621.2Re-query CCDS DB by Nucleotide ID:NM_014806Re-query CCDS DB by Protein ID:NP_055621Link to BLAST:NP_055621.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129471.2 1516 Q8N2Y8 1516 100% 0 0
NP_055621.2 1516 Q8N2Y8 1516 100% 0 0

Chromosomal Locations for CCDS 35008.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 35546522 35548535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35555060 35555701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35555952 35556137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35556308 35556448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35557914 35557990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35558197 35558371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35558462 35558567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35559226 35559272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35560029 35560851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35560960 35561097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35561181 35561382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4551 nt):
ATGGATAGTCCCCCAAAGCTGACTGGAGAGACCCTCATCGTTCATCACATCCCCCTGGTGCACTGCCAAG
TCCCAGACAGGCAGTGCTGTGGAGGGGCAGGTGGAGGTGGTGGGAGCACAAGACCTAATCCCTTCTGCCC
ACCTGAGCTGGGCATCACCCAGCCCGATCAAGACCTAGGACAAGCTGACTCCCTGCTATTCAGCAGCCTG
CACTCTACTCCAGGAGGAACTGCACGGTCTATAGACAGCACCAAGAGTAGGAGTCGGGATGGAAGAGGCC
CTGGAGCCCCCAAACGACACAACCCCTTCTTGCTGCAGGAGGGTGTGGGTGAGCCAGGACTTGGTGACCT
GTATGATGACAGCATTGGTGACAGTGCCACCCAGCAGTCCTTCCACCTGCATGGCACTGGCCAGCCCAAC
TTTCATCTATCCTCTTTCCAGCTGCCACCATCTGGCCCCAGAGTGGGCAGGCCATGGGGGACAACACGCA
GTCGGGCTGGAGTGGTGGAAGGGCAGGAACAGGAGCCAGTGATGACCTTGGATACTCAGCAGTGCGGCAC
CAGCCACTGCTGCCGGCCAGAGCTGGAAGCAGAGACTATGGAGCTGGATGAGTGTGGGGGACCTGGTGGG
AGTGGCAGTGGGGGTGGAGCCAGCGATACCTCTGGCTTTTCCTTTGACCAGGAATGGAAGCTCAGTTCAG
ATGAATCCCCAAGGAACCCTGGATGCTCCGGCTCAGGGGACCAGCACTGCCGCTGCAGTAGCACATCCAG
TCAGTCCGAGGCAGCTGACCAGTCCATGGGCTATGTGAGCGACTCCTCCTGCAACAGTTCAGATGGTGTG
CTGGTCACCTTCAGCACCCTCTACAACAAGATGCATGGCACCCCCCGTGCCAATCTCAACTCTGCCCCAC
AGTCCTGCAGCGACTCTTCCTTCTGCAGCCACTCAGACCCTGGCGCCTTCTATCTGGATCTGCAGCCCTC
CCCATTTGAGTCTAAGATGTCTTATGAGTCCCATCACCCTGAAAGTGGAGGAAGGGAAGGGGGCTATGGT
TGCCCTCATGCCTCTTCTCCTGAGCTTGATGCCAACTGCAACTCCTACCGCCCACACTGTGAGCCGTGCC
CAGCAGTGGCTGACCTCACAGCCTGCTTCCAAAGCCAGGCCCGTCTTGTTGTGGCCACACAAAATTACTA
TAAACTTGTCACCTGTGACCTATCTTCCCAATCATCCCCAAGCCCTGCTGGCTCTTCCATCACTAGCTGC
TCTGAGGAACACACCAAGATAAGTCCCCCACCAGGCCCTGGCCCAGACCCAGGCCCCAGCCAGCCCTCTG
AGTATTACCTATTCCAGAAGCCAGAAGTCCAGCCAGAGGAACAAGAAGCAGTGAGTTCCTCCACCCAAGC
AGCAGCTGCTGTGGGCCCCACTGTGCTTGAGGGACAAGTATACACGAATACTTCACCCCCCAACCTCAGC
ACTGGACGTCAGCGCTCCCGCAGCTATGATCGCAGCCTGCAGCGCAGCCCTCCTGTCCGCCTGGGCTCGC
TGGAACGTATGTTGAGTTGCCCAGTGCGCTTGAGTGAGGGCCCTGCAGCCATGGCCGGGCCTGGCTCCCC
ACCCAGGAGGGTCACCTCCTTTGCCGAGCTGGCCAAGGGCCGGAAGAAAACTGGAGGCTCTGGCTCGCCC
CCACTTCGTGTGAGTGTTGGGGACTCCTCCCAGGAGTTCTCACCCATCCAAGAAGCCCAGCAAGATCGGG
GGGCCCCACTGGATGAGGGCACTTGCTGTAGCCATAGCCTGCCACCCATGCCTTTGGGGCCAGGCATGGA
CCTACTTGGCCCAGACCCAAGTCCACCCTGGTCCACCCAGGTCTGTCAGGGACCCCACTCCAGTGAGATG
CCTCCTGCTGGCCTCAGAGCTACTGGGCAAGGCCCCCTGGCTCAGCTGATGGATCCAGGGCCTGCTCTCC
CAGGGAGCCCAGCCAACAGCCATACCCAGAGGGATGCAAGAGCTAGAGCTGACGGGGGTGGCACCGAGAG
CCGACCAGTCCTTCGCTACAGCAAGGAACAGAGGCCAACCACACTGCCCATCCAGCCCTTCGTGTTCCAG
CACCACTTCCCCAAGCAGCTGGCCAAGGCCCGGGCCCTCCACAGCCTTTCCCAGCTCTACAGCCTCTCAG
GCTGCAGCCGTACACAGCAGCCTGCCCCACTGGCTGCCCCTGCTGCTCAAGTCTCAGTCCCAGCTCCCTC
AGGGGAACCGCAGGCATCCACTCCCCGAGCCACTGGCAGAGGTGCCAGGAAAGCTGGGTCTGAGCCAGAG
ACCTCTCGGCCATCGCCCCTGGGCAGCTACTCCCCCATCCGGAGTGTTGGCCCCTTTGGGCCCAGCACTG
ACTCTTCTGCCTCCACTTCGTGCTCCCCTCCCCCAGAGCAGCCCACAGCCACAGAAAGCCTGCCCCCATG
GAGCCACTCCTGTCCTTCTGCTGTCCGGCCTGCCACCTCCCAGCAGCCGCAGAAGGAGGATCAGAAGATA
CTGACCTTGACTGAGTACCGGCTCCATGGAACAGGAAGCTTGCCGCCTCTGGGCTCCTGGCGATCTGGCC
TCAGCCGAGCAGAGAGCCTGGCCCGGGGAGGTGGTGAGGGCAGCATGGCCACCAGGCCCAGTAATGCCAA
CCACCTATCCCCTCAAGCCCTCAAGTGGCGGGAATACAGGAGGAAGAACCCACTAGGGCCACCTGGTTTG
TCAGGGAGCCTAGACCGAAGATCACAAGAAGCTCGGCTGGCCCGAAGAAACCCTATCTTTGAGTTCCCTG
GCTCCCTCAGTGCTGCCAGCCATCTGAACTGCCGGCTGAATGGCCAAGCAGTGAAGCCGTTACCACTGAC
CTGCCCTGACTTCCAGGACCCCTTTTCCTTGACGGAGAAGCCTCCAGCTGAGTTTTGTCTGTCCCCAGAT
GGCAGCTCAGAGGCCATTTCCATTGACCTGCTTCAGAAAAAAGGGCTGGTAAAAGCTGTTAACATCGCTG
TGGACCTCATTGTGGCTCATTTTGGCACAAGCCGGGATCCCGGGGTGAAGGCAAAGCTGGGAAACAGTTC
TGTGAGCCCCAATGTGGGCCACCTGGTTCTGAAGTACTTGTGCCCTGCCGTCCGCGCCGTGCTGGAGGAT
GGGCTCAAGGCCTTTGTACTGGACGTCATCATCGGGCAGCGTAAGAACATGCCATGGAGTGTGGTTGAGG
CTTCCACACAGCTAGGCCCATCCACCAAGGTCCTGCATGGCCTCTACAACAAAGTCAGCCAATTCCCAGA
GCTCACCAGTCATACCATGCGCTTCAACGCCTTCATCCTCGGCCTGCTCAACATCCGGTCCCTGGAGTTC
TGGTTTAATCACCTCTATAACCACGAAGACATCATCCAGACCCACTACCAGCCCTGGGGCTTCCTGAGTG
CAGCTCATACCGTGTGTCCCGGCCTCTTTGAAGAGCTGCTGCTGCTGCTACAGCCCCTGGCCCTGCTGCC
CTTCAGCCTCGACTTGCTGTTCCAGCACCGGCTGCTGCAAAGTGGGCAGCAGCAGCGGCAGCACAAGGAA
CTGCTGCGGGTGTCCCAGGACCTGCTGCTGTCTGCCCACTCCACGCTGCAGCTGGCCCGGGCCCGGGGCC
AGGAGGGCCCTGGAGACGTGGACAGGGCAGCCCAAGGGGAGCGGGTGAAGGGTGTGGGTGCCTCAGAAGG
TGGAGAAGAGGAAGAGGAAGAAGAGGAGACAGAAGAGGTGGCAGAGGCAGCCGGGGGCTCAGGGCGTGCC
AGGTGGGCCCGAGGTGGGCAGGCCGGCTGGTGGTACCAGCTCATGCAGAGCTCCCAGGTCTACATCGATG
GCTCCATTGAGGGTTCCAGGTTCCCTCGTGGTAGCAGCAACAGCAGCAGCGAGAAAAAGAAAGGGGCAGG
AGGTGGGGGACCTCCCCAGGCTCCACCACCCCGAGAGGGAGTAGTGGAGGGGGCTGAGGCCTGCCCTGCC
TCTGAGGAGGCCCTGGGCCGGGAAAGGGGCTGGCCCTTCTGGATGGGGAGCCCCCCTGACTCTGTGCTGG
CCGAGCTGAGGCGCAGTCGGGAGAGGGAAGGGCCCGCTGCCTCGCCAGCAGAAAATGAGGAAGGGGCCTC
AGAGCCTTCACCTGGAGGCATCAAGTGGGGACACCTCTTTGGCTCCCGAAAAGCCCAGCGGGAGGCCCGG
CCCACAAATAGGCTCCCCTCGGACTGGCTGAGCCTGGACAAGTCCATGTTCCAACTAGTGGCGCAGACAG
TGGGTTCCCGCCGGGAGCCAGAGCCCAAGGAGAGCCTGCAGGAGCCACACTCCCCAGCCCTGCCCTCCAG
TCCTCCGTGTGAGGTGCAGGCACTGTGCCACCACCTGGCCACCGGCCCTGGACAGCTGAGCTTCCACAAA
GGAGACATCCTACGAGTGCTGGGGCGAGCTGGAGGAGACTGGCTGCGCTGCAGCCGTGGCCCCGACTCTG
GCCTGGTGCCCCTGGCCTACGTGACATTGACCCCAACTCCAAGTCCAACCCCTGGAAGCAGCCAAAACTG
A

Translation (1516 aa):
MDSPPKLTGETLIVHHIPLVHCQVPDRQCCGGAGGGGGSTRPNPFCPPELGITQPDQDLGQADSLLFSSL
HSTPGGTARSIDSTKSRSRDGRGPGAPKRHNPFLLQEGVGEPGLGDLYDDSIGDSATQQSFHLHGTGQPN
FHLSSFQLPPSGPRVGRPWGTTRSRAGVVEGQEQEPVMTLDTQQCGTSHCCRPELEAETMELDECGGPGG
SGSGGGASDTSGFSFDQEWKLSSDESPRNPGCSGSGDQHCRCSSTSSQSEAADQSMGYVSDSSCNSSDGV
LVTFSTLYNKMHGTPRANLNSAPQSCSDSSFCSHSDPGAFYLDLQPSPFESKMSYESHHPESGGREGGYG
CPHASSPELDANCNSYRPHCEPCPAVADLTACFQSQARLVVATQNYYKLVTCDLSSQSSPSPAGSSITSC
SEEHTKISPPPGPGPDPGPSQPSEYYLFQKPEVQPEEQEAVSSSTQAAAAVGPTVLEGQVYTNTSPPNLS
TGRQRSRSYDRSLQRSPPVRLGSLERMLSCPVRLSEGPAAMAGPGSPPRRVTSFAELAKGRKKTGGSGSP
PLRVSVGDSSQEFSPIQEAQQDRGAPLDEGTCCSHSLPPMPLGPGMDLLGPDPSPPWSTQVCQGPHSSEM
PPAGLRATGQGPLAQLMDPGPALPGSPANSHTQRDARARADGGGTESRPVLRYSKEQRPTTLPIQPFVFQ
HHFPKQLAKARALHSLSQLYSLSGCSRTQQPAPLAAPAAQVSVPAPSGEPQASTPRATGRGARKAGSEPE
TSRPSPLGSYSPIRSVGPFGPSTDSSASTSCSPPPEQPTATESLPPWSHSCPSAVRPATSQQPQKEDQKI
LTLTEYRLHGTGSLPPLGSWRSGLSRAESLARGGGEGSMATRPSNANHLSPQALKWREYRRKNPLGPPGL
SGSLDRRSQEARLARRNPIFEFPGSLSAASHLNCRLNGQAVKPLPLTCPDFQDPFSLTEKPPAEFCLSPD
GSSEAISIDLLQKKGLVKAVNIAVDLIVAHFGTSRDPGVKAKLGNSSVSPNVGHLVLKYLCPAVRAVLED
GLKAFVLDVIIGQRKNMPWSVVEASTQLGPSTKVLHGLYNKVSQFPELTSHTMRFNAFILGLLNIRSLEF
WFNHLYNHEDIIQTHYQPWGFLSAAHTVCPGLFEELLLLLQPLALLPFSLDLLFQHRLLQSGQQQRQHKE
LLRVSQDLLLSAHSTLQLARARGQEGPGDVDRAAQGERVKGVGASEGGEEEEEEEETEEVAEAAGGSGRA
RWARGGQAGWWYQLMQSSQVYIDGSIEGSRFPRGSSNSSSEKKKGAGGGGPPQAPPPREGVVEGAEACPA
SEEALGRERGWPFWMGSPPDSVLAELRRSREREGPAASPAENEEGASEPSPGGIKWGHLFGSRKAQREAR
PTNRLPSDWLSLDKSMFQLVAQTVGSRREPEPKESLQEPHSPALPSSPPCEVQALCHHLATGPGQLSFHK
GDILRVLGRAGGDWLRCSRGPDSGLVPLAYVTLTPTPSPTPGSSQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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