NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS35221.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35221.1 Public Homo sapiens X MAGEB10 24 110 108 CCDS HistoryNCBI Gene:139422Re-query CCDS DB by CCDS ID:35221.1Re-query CCDS DB by GeneID:139422See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35221.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356790.2 ENSP00000368304.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356790.2Link to Ensembl Protein Viewer:ENSP00000368304.1Re-query CCDS DB by Nucleotide ID:ENST00000356790Re-query CCDS DB by Protein ID:ENSP00000368304
Original member Current member EBI ENST00000614159.1 ENSP00000480889.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000614159.1Link to Ensembl Protein Viewer:ENSP00000480889.1Re-query CCDS DB by Nucleotide ID:ENST00000614159Re-query CCDS DB by Protein ID:ENSP00000480889
Original member Current member NCBI NM_182506.3 NP_872312.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182506.3Link to Protein Sequence:NP_872312.2Re-query CCDS DB by Nucleotide ID:NM_182506Re-query CCDS DB by Protein ID:NP_872312Link to BLAST:NP_872312.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_872312.2 347 Q96LZ2 347 100% 0 0

Chromosomal Locations for CCDS 35221.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 27821307 27822350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGCCTCGAGGTCAGAAGAGTAAACTCCGTGCCAGGGAAAAACGCCGTCAGGCCCGAGGAGGGCTGGAAG
ATTTGATAGATGCTCTGGACATTTTAGAAGAGGAGGAAGAATCTCCCCCCTCTGCCTCTGCTTGTTTGAA
GGATGTTTTCCAGAGTTCACTTGATGGGGCATCCAACAATCCCCATGGACTTCGGGAAGCCCAATCCACC
AGCACATCTGCTACAGCTGCTTCACACACAAGACATCCCGAAGGAGTCAACGACCAAATGGAAGAAAGGC
CAATATGCACACAAGATCTAGAAGCCACTGATAGCTTTCCCAGAGGCCCTGTAGATGAGAAAGTAATTAT
ATTGGTGCATTACTTGCTGTACAAGTACCAAATGAAAGAGCCCATTACAAAGGCAGATATGCTGAGAAAT
GTAACCCAAATGTCCAAGAGCCAGTTCCCTGTAATCCTGAGCAGAGCTTCTGAGCACCTGGAGCTGATCT
TTGGTCTTGACCTGAAGGAAGTGGAGCCTAATAAGCACATCTATGTCCTTGTCAACAAACTAGATCTAGG
CTGTGATGCAAAGCTGAGTGATGAAACAGGCGTGCCCAAGACTGGCCTGCTGATGACTGTCCTGGGTATT
ATCTTCACAAATGGCAATTGTGTCGCTGAGGAGGAAGTCTGGAAAGTGTTTAACACGATGGGGTTATATG
ACGGAATTGAGCACTTCATGTTTGGGGAGCCCAGGAAGCTCCTTACCAAAGATTTGGTGAAAGAAAATTA
CCTGGAGTACCAGCAAGTGCCCAACAGTGATCCTCCACGCTATCAATTCCTATGGGGCCCAAGAGCCCAT
GCTGAAACCAGCAAGATGAAAGTTCTTGAGTTTTTGGCCAAGGTAAATGATACAGCTCCCAGTGAATTCT
CAAACTGGTATACAGAGGCTTTACAAGATGAGGAAGAGAGAGCCAGAGCCAGAGTTGCAGCCAAGGCTCG
CGTTAGTGCCACAGCCGGTGCACGTTCCAAGGTTAAGTCCAGCAAGTCCTCCCAACTGCAGTAA

Translation (347 aa):
MPRGQKSKLRAREKRRQARGGLEDLIDALDILEEEEESPPSASACLKDVFQSSLDGASNNPHGLREAQST
STSATAASHTRHPEGVNDQMEERPICTQDLEATDSFPRGPVDEKVIILVHYLLYKYQMKEPITKADMLRN
VTQMSKSQFPVILSRASEHLELIFGLDLKEVEPNKHIYVLVNKLDLGCDAKLSDETGVPKTGLLMTVLGI
IFTNGNCVAEEEVWKVFNTMGLYDGIEHFMFGEPRKLLTKDLVKENYLEYQQVPNSDPPRYQFLWGPRAH
AETSKMKVLEFLAKVNDTAPSEFSNWYTEALQDEEERARARVAAKARVSATAGARSKVKSSKSSQLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH