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Report for CCDS3535.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3535.1 Public Homo sapiens 4 PRR27 24 110 108 CCDS HistoryNCBI Gene:401137Re-query CCDS DB by CCDS ID:3535.1Re-query CCDS DB by GeneID:401137See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3535.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344526.10 ENSP00000343172.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000344526.10Link to Ensembl Protein Viewer:ENSP00000343172.5Re-query CCDS DB by Nucleotide ID:ENST00000344526Re-query CCDS DB by Protein ID:ENSP00000343172
Original member Current member EBI ENST00000502294.5 ENSP00000426249.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000502294.5Link to Ensembl Protein Viewer:ENSP00000426249.1Re-query CCDS DB by Nucleotide ID:ENST00000502294Re-query CCDS DB by Protein ID:ENSP00000426249
Original member Current member NCBI NM_214711.4 NP_999876.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_214711.4Link to Protein Sequence:NP_999876.2Re-query CCDS DB by Nucleotide ID:NM_214711Re-query CCDS DB by Protein ID:NP_999876Link to BLAST:NP_999876.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_999876.2 219 Q6MZM9 219 100% 0 0

Chromosomal Locations for CCDS 3535.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 70154376 70154426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70156054 70156077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70158328 70158900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70161586 70161597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGAAGCTTCTCCTTTGGGCCTGCATTGTATGTGTTGCTTTTGCAAGGAAGAGACGGTTCCCCTTCATTG
GTGAGGATGACAATGACGATGGTCACCCACTTCATCCATCTCTGAATATTCCTTATGGCATACGGAATTT
ACCACCTCCTCTTTATTATCGCCCAGTGAATACAGTCCCCAGTTACCCTGGGAATACTTACACTGACACA
GGGTTACCTTCGTATCCCTGGATTCTAACTTCTCCTGGATTCCCCTATGTCTATCACATCCGTGGTTTTC
CCTTAGCTACTCAGTTGAATGTTCCTCCTCTCCCTCCTAGGGGTTTCCCGTTTGTCCCTCCTTCAAGGTT
TTTTTCAGCAGCTGCAGCACCCGCTGCCCCACCTATTGCAGCTGAGCCTGCTGCAGCTGCACCTCTTACA
GCCACACCTGTAGCAGCTGAGCCTGCTGCAGGGGCCCCTGTTGCAGCTGAGCCTGCTGCAGAGGCACCTG
TTGGAGCTGAGCCTGCTGCAGAGGCACCTGTTGCAGCTGAGCCTGCTGCAGAGGCACCTGTTGGAGTGGA
GCCAGCTGCAGAGGAACCTTCACCAGCTGAGCCTGCTACAGCCAAGCCTGCTGCCCCAGAACCTCACCCT
TCTCCCTCTCTTGAACAGGCAAATCAGTGA

Translation (219 aa):
MKLLLWACIVCVAFARKRRFPFIGEDDNDDGHPLHPSLNIPYGIRNLPPPLYYRPVNTVPSYPGNTYTDT
GLPSYPWILTSPGFPYVYHIRGFPLATQLNVPPLPPRGFPFVPPSRFFSAAAAPAAPPIAAEPAAAAPLT
ATPVAAEPAAGAPVAAEPAAEAPVGAEPAAEAPVAAEPAAEAPVGVEPAAEEPSPAEPATAKPAAPEPHP
SPSLEQANQ


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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