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Report for CCDS35513.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35513.1 Public Mus musculus 1 A830018L16Rik 23 108 98 CCDS HistoryNCBI Gene:320492Re-query CCDS DB by CCDS ID:35513.1Re-query CCDS DB by GeneID:320492See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35513.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048613.13 ENSMUSP00000043857.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048613.13Link to Ensembl Protein Viewer:ENSMUSP00000043857.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000048613Re-query CCDS DB by Protein ID:ENSMUSP00000043857
Original member Current member NCBI NM_177173.6 NP_796147.2 Accepted alive Link to Nucleotide Sequence:NM_177173.6Link to Protein Sequence:NP_796147.2Re-query CCDS DB by Nucleotide ID:NM_177173Re-query CCDS DB by Protein ID:NP_796147Link to BLAST:NP_796147.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796147.2 459 Q8BZJ8-1 459 100% 0 0

Chromosomal Locations for CCDS 35513.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 11414569 11414637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11511918 11512065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11518578 11518709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11545154 11545282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11562963 11562991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11588374 11588546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11596151 11596317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11747965 11748091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11798481 11798566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11829815 11829891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11933544 11933591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11950963 11951056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11972046 11972102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11974923 11974966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGGCATCTCGTCAACAAACCCGAATCCAGGCTTACCTGGAGAAAAACAAGATCGGTCCTCTGTTTGAGG
AATTAATGACCAAGTTAATAACTGAGACACCTGACCAGCCAATTCCATTTCTCATTGACCATCTTCAATC
TAAACAAGGAAACCAAGGACAACTGCAAAGAGCTTTGTCAGGGTCAGCAGCTCTCTGGGCAGAAAGTGAA
TCATCAGAACCCAAAGGAACGAGAAGGGATTTTAGAAGCTATGATAAACCTTGGCAGATGAATGCAAAGA
AGCCTAAAAAATCAAAAAGTGATCTGGCTGTATCTAATATTTCTCCTCCATCACCAGACTCCAAATCATT
GCCAAGGTCAGTAGACCATCTTAAGTGGAACTGGCGGACTAAACCACAAAGCCGTGATTTTGATGAATTG
AACCACATCCTTCAAGAGAGCAAGAAGCTGGGGAAAGCCCTTGAGAATCTCTCTCGAAGTATCGCGATTT
CAGATGAACTTGATAAGGAAACATTGGCTTTCAATTCCTCTCTTCTGAGACCTCGTGTGATTGGGGAGTG
GATCGGCAGGGCAGAAAATGATGCTGATCCCCTTGCAGCTGAAATGCTGCAGCCGCCGGTTCCGCGGAGT
AAGAATGACTCATGGGAAAGTGAAGACAGCAGCTCCAGTCCAGCAGGAAGCTTAAAGATGGAGCCCAAGA
CGAAAGGATTAAAACAGCAGCAGCAGCAGCACAAGAAACTCCTGGCTGCAATGCTTTCCCAGGACTCCTT
CGAGTCCATCCATAGCCCCACACCATCTGTAATAGAAGAAGACATTGATAATGAAGACGATGCAATGGAG
TTGCTGGAAAATCTGGATGACTTAAGGATGGAGGGTGTAACCACTCTGGTACTTTCGGGGAGCAAATTTA
ACCAAGGTCGTCCTACTCACCCTGCCGAGCCACAGGCCAAAGTCACACTGAACATCTGTTCAAGGCTTCA
AGGAGACAACTTGATGGAAAGAACAGAAGACACACTACAAATACTTCATACTCCAGATGAGATAATCCCA
GACTCATTAGATTCTTTACCTGGGACAGAAGAAACTCTTATGGAGGAAGGTGAAGATTTTGAGAAAACAT
CAAACTTAACAGAACCAGGAGAAGCCTCTAGTGGAGCACACTCTTTGAAATCCTACATGGAAGAAGATGA
GTCTTTGAAGCAATTGCAGGTTGTGCATCAGCCATGGCTTTTACCAAGTGACACAGAAAGTGAAGGAATT
GAAGCAGAGCAAGACAAACGTTCTGCTGATCTTCTCTGTGTGCCATGCTCGTCCTGTCCTACCCTGATCT
ATTCAGGTCTGTCTGTGAAACCGGCAAAGGAAGTTGCAAGTGGTCCTTAA

Translation (459 aa):
MASRQQTRIQAYLEKNKIGPLFEELMTKLITETPDQPIPFLIDHLQSKQGNQGQLQRALSGSAALWAESE
SSEPKGTRRDFRSYDKPWQMNAKKPKKSKSDLAVSNISPPSPDSKSLPRSVDHLKWNWRTKPQSRDFDEL
NHILQESKKLGKALENLSRSIAISDELDKETLAFNSSLLRPRVIGEWIGRAENDADPLAAEMLQPPVPRS
KNDSWESEDSSSSPAGSLKMEPKTKGLKQQQQQHKKLLAAMLSQDSFESIHSPTPSVIEEDIDNEDDAME
LLENLDDLRMEGVTTLVLSGSKFNQGRPTHPAEPQAKVTLNICSRLQGDNLMERTEDTLQILHTPDEIIP
DSLDSLPGTEETLMEEGEDFEKTSNLTEPGEASSGAHSLKSYMEEDESLKQLQVVHQPWLLPSDTESEGI
EAEQDKRSADLLCVPCSSCPTLIYSGLSVKPAKEVASGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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