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Report for CCDS35525.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35525.1 Public Mus musculus 1 Kcnq5 23 108 98 CCDS HistoryNCBI Gene:226922Re-query CCDS DB by CCDS ID:35525.1Re-query CCDS DB by GeneID:226922See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35525.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029667.12 ENSMUSP00000029667.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029667.12Link to Ensembl Protein Viewer:ENSMUSP00000029667.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000029667Re-query CCDS DB by Protein ID:ENSMUSP00000029667
Original member Current member NCBI NM_023872.3 NP_076361.1 Accepted alive Link to Nucleotide Sequence:NM_023872.3Link to Protein Sequence:NP_076361.1Re-query CCDS DB by Nucleotide ID:NM_023872Re-query CCDS DB by Protein ID:NP_076361Link to BLAST:NP_076361.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076361.1 933 Q9JK45 933 100% 0 0

Chromosomal Locations for CCDS 35525.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 21402163 21403125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21404932 21405058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21405793 21405924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21424049 21424157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21457404 21457624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21466383 21466409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21469470 21469564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21479374 21479469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21487223 21487333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21505300 21505425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21505684 21505859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21535061 21535187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21593524 21593614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21961181 21961581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2802 nt):
ATGCCCCGCCACCACGCGGGAGGAGAGGAGGGCGGTGCCGCCGGGCTCTGGGTGAGGAGCGGCGCGGCGG
CGGCGGCAGGCGCGGGTGGGGGGCGCCCGGGCAGCGGCATGAAGGATGTGGAGTCCGGCCGCGGCAGGGT
GCTGCTGAACTCGGCGGCCGCCAGGGGCGACGGCCTGCTGTTGCTCGGCACCCGCGCGGCGGCGCTCGGC
GGAGGCGGCGGCGGCTTGAGAGAGAGCCGCCGGGGCAAGCAGGGGGCCCGAATGAGCCTGCTGGGGAAGC
CGCTCTCCTACACCAGCAGCCAGAGCTGTCGGCGCAACGTCAAGTACCGGCGGGTGCAGAACTATCTGTA
CAACGTGCTGGAGCGACCCCGCGGCTGGGCGTTCGTCTACCACGCGTTCGTTTTTCTCCTTGTGTTTGGT
TGCTTGATTTTGTCAGTGTTTTCTACCATCCCTGAGCATACAAAATTGGCTTCAAGTTGCCTCTTAATTC
TGGAGTTCGTGATGATCGTTGTCTTTGGCTTGGAGTTCATCATTCGAATCTGGTCTGCAGGTTGCTGTTG
TCGTTATAGAGGATGGCAAGGAAGACTGAGGTTTGCTCGAAAACCATTCTGTGTAATAGATACCATTGTT
CTCATCGCTTCAATAGCAGTTGTCTCTGCAAAAACTCAGGGTAATATTTTCGCCACGTCAGCGCTCAGAA
GTCTCCGGTTCCTACAGATCCTGCGTATGGTGCGCATGGACAGAAGGGGAGGGACCTGGAAGCTGCTCGG
CTCTGTGGTTTATGCTCACAGCAAGGAATTAATCACAGCCTGGTACATTGGATTTCTGGTTCTTATTTTT
TCATCCTTCCTTGTCTATCTTGTGGAAAAGGATGCCAATAAAGAGTTTTCGACATATGCGGATGCTCTCT
GGTGGGGCACAATCACACTGACAACCATTGGCTATGGAGACAAAACACCCCTAACGTGGCTGGGAAGACT
GCTCTCTGCAGGCTTCGCACTCCTTGGCATTTCTTTCTTTGCACTTCCTGCTGGCATTCTTGGCTCAGGT
TTTGCATTAAAAGTACAGGAGCAGCACCGCCAGAAGCATTTTGAGAAAAGAAGGAACCCAGCTGCCAACC
TCATCCAGTGTGTCTGGCGTAGTTATGCAGCTGATGAAAAATCTGTTTCCATTGCAACCTGGAAGCCACA
TCTGAAGGCCTTGCACACCTGCAGCCCTACCAAGAAAGAACAAGGGGAGGCATCAAGCAGTCAGAAGCTG
AGCTTTAAGGAGCGAGTGCGCATGGCTAGCCCAAGGGGCCAGAGCATTAAGAGCAGACAAGCATCAGTAG
GTGACAGGAGATCCCCGAGCACTGACATCACTGCCGAGGGCAGCCCCACCAAAGTCCAGAAGAGTTGGAG
CTTCAACGACCGAACCCGCTTCAGGCCCTCACTACGGCTCAAGAGTTCCCAGCCAAAGCCAGTGATAGAC
GCCGACACAGCCCTTGGCATTGATGATGTGTATGATGAGAAAGGATGCCAGTGTGACGTCTCTGTGGAGG
ACCTCACCCCACCACTTAAAACCGTCATCCGAGCAATCAGAATTATGAAGTTTCATGTTGCAAAGCGGAA
GTTTAAGGAAACATTACGCCCATATGATGTAAAAGATGTCATTGAACAATACTCTGCTGGTCACCTGGAC
ATGCTTTGTAGAATAAAAAGCCTTCAGACACGCGTTGATCAAATTCTTGGAAAAGGACAAATGACGTCAG
ATAAGAAGAGCCGAGAGAAAATAACAGCAGAACACGAGACAACAGATGACCCCAGCATGCTCGCCCGGGT
TGTGAAGGTTGAGAAACAGGTCCAGTCCATCGAATCCAAGCTGGACTGCCTGCTGGATATCTATCAACAG
GTCCTCCGGAAAGGCTCTGCCTCCGCCCTCACTCTGGCATCCTTTCAGATCCCGCCTTTTGAATGTGAAC
AGACCTCTGACTATCAAAGTCCTGTGGATAGCAAAGACCTGTCTGGCTCAGCACAAAACAGCGGCTGTTT
AACGAGGTCAGCCAGTGCCAACATCTCAAGAGGCCTGCAGTTCATCCTAACACCAAATGAGTTCAGTGCT
CAGACTTTCTATGCGCTTAGCCCTACTATGCACAGCCAAGCTACCCAGGTACCCATGAGTCAAAATGACG
GCTCCTCCGTGGTAGCCACCAATAACATTGCAAACCAAATAAGCGCCGCACCCAAGCCAGCAGCCCCAAC
AACTTTACAGATCCCTCCTCCTCTCTCGGCCATCAAGCACTTGTCCAGGCCAGAACCTCTGCTCTCAAAC
CCCACCGGCTTACAAGAGAGTATTTCTGATGTCACCACCTGCCTTGTTGCCTCCAAGGAAAGTGTTCAGT
TTGCACAGTCAAACCTGACCAAGGACCGTTCCCTGAGGAAAAGTTTCGACATGGGAGGAGAAACTCTGTT
GTCTGTCCGCCCCATGGTGCCCAAGGATTTGGGCAAATCTCTGTCTGTACAAAACCTGATCAGGTCGACA
GAAGAACTGAACTTACAGTTTTCAGGCAGCGAGTCAAGCGGCTCTCGAGGCAGTCAAGATTTTTATCCCA
AGTGGAGAGAATCCAAATTGTTTATAACTGATGAGGAGGTCGGTGCCGAAGAGACAGAAACAGATACTTT
TGACGGCACCCCACCGCCTGCGGGGGAGGCTGCTTTCTCATCAGACTCTCTAAGGACTGGAAGGTCACGG
TCATCTCAGAACATTTGTAAGACAGGAGACAGTACAGACGCCCTCAGTTTGCCTCACGTCAAACTGAACT
AA

Translation (933 aa):
MPRHHAGGEEGGAAGLWVRSGAAAAAGAGGGRPGSGMKDVESGRGRVLLNSAAARGDGLLLLGTRAAALG
GGGGGLRESRRGKQGARMSLLGKPLSYTSSQSCRRNVKYRRVQNYLYNVLERPRGWAFVYHAFVFLLVFG
CLILSVFSTIPEHTKLASSCLLILEFVMIVVFGLEFIIRIWSAGCCCRYRGWQGRLRFARKPFCVIDTIV
LIASIAVVSAKTQGNIFATSALRSLRFLQILRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIF
SSFLVYLVEKDANKEFSTYADALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLGISFFALPAGILGSG
FALKVQEQHRQKHFEKRRNPAANLIQCVWRSYAADEKSVSIATWKPHLKALHTCSPTKKEQGEASSSQKL
SFKERVRMASPRGQSIKSRQASVGDRRSPSTDITAEGSPTKVQKSWSFNDRTRFRPSLRLKSSQPKPVID
ADTALGIDDVYDEKGCQCDVSVEDLTPPLKTVIRAIRIMKFHVAKRKFKETLRPYDVKDVIEQYSAGHLD
MLCRIKSLQTRVDQILGKGQMTSDKKSREKITAEHETTDDPSMLARVVKVEKQVQSIESKLDCLLDIYQQ
VLRKGSASALTLASFQIPPFECEQTSDYQSPVDSKDLSGSAQNSGCLTRSASANISRGLQFILTPNEFSA
QTFYALSPTMHSQATQVPMSQNDGSSVVATNNIANQISAAPKPAAPTTLQIPPPLSAIKHLSRPEPLLSN
PTGLQESISDVTTCLVASKESVQFAQSNLTKDRSLRKSFDMGGETLLSVRPMVPKDLGKSLSVQNLIRST
EELNLQFSGSESSGSRGSQDFYPKWRESKLFITDEEVGAEETETDTFDGTPPPAGEAAFSSDSLRTGRSR
SSQNICKTGDSTDALSLPHVKLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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