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Report for CCDS35527.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35527.1 Public Mus musculus 1 Col9a1 23 108 98 CCDS HistoryNCBI Gene:12839Re-query CCDS DB by CCDS ID:35527.1Re-query CCDS DB by GeneID:12839See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35527.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054588.14 ENSMUSP00000051579.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054588.14Link to Ensembl Protein Viewer:ENSMUSP00000051579.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000054588Re-query CCDS DB by Protein ID:ENSMUSP00000051579
Original member Current member NCBI NM_007740.3 NP_031766.3 Accepted alive Link to Nucleotide Sequence:NM_007740.3Link to Protein Sequence:NP_031766.3Re-query CCDS DB by Nucleotide ID:NM_007740Re-query CCDS DB by Protein ID:NP_031766Link to BLAST:NP_031766.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031766.3 921 Q05722-1 921 99.5657% 0 4

Chromosomal Locations for CCDS 35527.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 24177855 24177868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24178259 24178332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24179284 24179361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24179475 24179607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24185038 24185434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24194683 24194766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24195517 24195537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24196891 24196965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24197300 24197335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24197444 24197506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24202014 24202067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24202297 24202332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24204658 24204681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24205054 24205107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24207386 24207439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24208174 24208206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24209059 24209115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24210373 24210426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24214539 24214592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24217536 24217589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24220744 24220797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24221579 24221632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24221770 24221823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24221945 24221998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24222422 24222475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24223575 24223619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24224504 24224557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24224647 24224700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24230196 24230249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24230883 24230954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24231451 24231486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24232185 24232229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24233571 24233603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24237125 24237271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24237442 24237496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24239207 24239395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24244358 24244435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24251677 24251861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2766 nt):
ATGAAGAACTTCTGGAAAATCTCAGTTTTCTTCTGTGTGTGCAGTTGTCTGGGACCCTGGGTATCCGCAA
CTCTTAAGCGTCGTGCAAGATTTCCTGCCAATTCCATTTCTAATGGTGGAAGTGAACTGTGTCCCAAGAT
CAGGATTGGCCAAGATGACTTACCAGGGTTTGACCTGATTTCTCAGTTCCAAATTGAGAAGGCTGCATCT
CGAAGGACTATCCAGAGGGTGGTGGGATCCACAGCCTTACAAGTGGCTTACAAGCTGGGAAGTAATGTAG
ACTTCAGGATTCCAACAAGGCATTTGTATCCCAGTGGACTGCCTGAAGAATATTCCTTTTTAACTACTTT
CCGGATGACTGGAAGCACACTTGAAAAGCACTGGAACATTTGGCAGATCCAGGATTCCGCAGGGAGAGAG
CAAGTTGGCGTGAAGATAAATGGCCAAACAAAGTCTGTCGCATTTTCATACAAGGGACTGGATGGGAGTC
TCCAAACGGCTGCCTTCTTGAATTTGCCGTCCTTGTTTGACTCCCGGTGGCATAAGCTCATGATTGGCGT
GGAAAGAACAAGCGCCACTCTTTTTATTGACTGCATCAGGATCGAATCTTTACCTATAAAGCCAAGAGGC
CAGATTGATGCGGATGGCTTTGCAGTGCTGGGAAAACTTGTGGACAATCCTCAGGTTTCTGTTCCTTTTG
AACTCCAGTGGATGCTGATTCATTGTGACCCCCTGAGACCCAGGAGAGAAACCTGTCATGAGCTGCCAAT
CAGAATCACAACCAGCCAGACCACTGATGAGAGAGGTCCTCCGGGTGAGCAGGGGCCTCCAGGGCCTCCT
GGGCCTCCTGGAGTTCCGGGCATAGATGGCATTGATGGTGACCGAGGTCCAAAGGGTCCCCCAGGACCTC
CGGGTCCTCCTGGAGACCCAGGCAAGCCAGGAGCACCAGGCAAGCCAGGCACACCAGGAGCTGATGGATT
AACAGGACCTGATGGATCCCCTGGCTCTGTTGGACCAAGGGGACAAAAAGGAGAACCTGGTGTACCTGGG
TCTCGTGGATTTCCAGGCCGTGGTATTCCAGGACCCCCTGGTCCTCCTGGGACCACAGGACTTCCTGGAG
AACTTGGCCGAGTAGGCCCTATTGGAGACCCTGGGAAAAGAGGACCACCTGGCCCTCCTGGACCTCCAGG
ACCCAGTGGAACAATTGGATTTCATGATGGAGACCCATTGTGCCCCAATTCCTGCCCACCAGGTCGCTCT
GGATATCCAGGCCTACCAGGCATGAGGGGCCATAAAGGGGCGAAAGGAGAAATCGGCGAGCCAGGAAGAC
AAGGACACAAGGGTGAAGAGGGTGACCAGGGGGAACTGGGAGAAGTTGGCGATCAAGGACCTCCAGGACC
TCAGGGTCTGAGAGGCATCACTGGCATAGTTGGAGACAAAGGAGAAAAGGGTGCTCGGGGATTTGATGGA
GAGCCTGGACCTCAGGGCATTCCAGGTGCAGCTGGTGATCAAGGACAGCGAGGCCCTCCAGGAGAAACAG
GTCCTGAGGGAGACAGAGGCATTCAAGGTTCCCGAGGAATTCCTGGATCCCCAGGGCCAAAAGGAGACAC
GGGCTTGCCAGGTGTAGATGGCCGAGATGGAATACCAGGAATGCCCGGGACAAAGGGTGAAGCAGGGAAG
CCTGGACCCCCCGGGGACGTGGGATTGCAGGGCTTACCAGGTGTCCCTGGAATCCCTGGTGCAAAAGGTG
TTGCCGGTGAAAAGGGTAACACGGGTGCTCCAGGAAAGCCCGGTCAGTTGGGAAGTTCAGGGAAACCAGG
CCAACAAGGGCCCCCAGGAGAGGTTGGACCTCGGGGACCCAGGGGCCTTCCAGGCAGTAGAGGCCCGGTA
GGACCAGAAGGGTCTCCAGGCATACCAGGGAAACTGGGATCTGTTGGCAGCCCTGGCCTTCCTGGCTTGC
CTGGGCCCCCTGGACTTCCTGGAATGAAAGGAGACAGGGGTGTATTTGGTGAACCGGGTCCCAAGGGTGA
ACAGGGTGCCTCTGGTGAAGAAGGTGAAGCAGGAGCAAGGGGTGACCTTGGAGATATGGGACAACCTGGC
CCAAAGGGATCTGTGGGTAACCCCGGGGAGCCGGGTCTGAGGGGGCCTGAAGGAATCAGAGGGCTTCCTG
GAGTGGAAGGACCAAGAGGACCACCTGGACCCCGGGGCATGCAGGGAGATCAGGGTGCCACTGGGCTGCC
TGGTATCCAGGGCCCTCCGGGCAGAGCGCCGACCGACCAGCACATCAAGCAGGTTTGCATGAGAGTCGTG
CAAGAGCATTTTGCGGAAATGGCAGCCAGCCTCAAGAGACCAGACACAGGAGCCTCTGGTCTTCCTGGGA
GGCCTGGCCCCCCTGGGCCTCCGGGCCCCCCTGGAGAGAATGGTTTCCCTGGTCAGATGGGAATCCGTGG
TCTCCCAGGCATTAAGGGTCCCCCTGGTGCTCTTGGCTTAAGAGGACCTAAAGGAGACTTGGGAGAAAAA
GGAGAACGTGGTCCTCCAGGAAGAGGTCCTAAGGGTTTGCCTGGAGCGATAGGTCTCCCAGGTGACCCAG
GCCCTGCCAGCTATGGGAAAAATGGCCGTGACGGAGAGCAAGGTCCCCCGGGAGTGGCAGGAATTCCTGG
TGTGCCTGGACCCCCAGGTCCTCCAGGCCCTCCTGGGTTCTGTGAGCCAGCCTCTTGCACCCTGCAGTCT
GGTCAAAGAGCATTTAGCAAAGGGCCGGACAAGTGA

Translation (921 aa):
MKNFWKISVFFCVCSCLGPWVSATLKRRARFPANSISNGGSELCPKIRIGQDDLPGFDLISQFQIEKAAS
RRTIQRVVGSTALQVAYKLGSNVDFRIPTRHLYPSGLPEEYSFLTTFRMTGSTLEKHWNIWQIQDSAGRE
QVGVKINGQTKSVAFSYKGLDGSLQTAAFLNLPSLFDSRWHKLMIGVERTSATLFIDCIRIESLPIKPRG
QIDADGFAVLGKLVDNPQVSVPFELQWMLIHCDPLRPRRETCHELPIRITTSQTTDERGPPGEQGPPGPP
GPPGVPGIDGIDGDRGPKGPPGPPGPPGDPGKPGAPGKPGTPGADGLTGPDGSPGSVGPRGQKGEPGVPG
SRGFPGRGIPGPPGPPGTTGLPGELGRVGPIGDPGKRGPPGPPGPPGPSGTIGFHDGDPLCPNSCPPGRS
GYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGDQGPPGPQGLRGITGIVGDKGEKGARGFDG
EPGPQGIPGAAGDQGQRGPPGETGPEGDRGIQGSRGIPGSPGPKGDTGLPGVDGRDGIPGMPGTKGEAGK
PGPPGDVGLQGLPGVPGIPGAKGVAGEKGNTGAPGKPGQLGSSGKPGQQGPPGEVGPRGPRGLPGSRGPV
GPEGSPGIPGKLGSVGSPGLPGLPGPPGLPGMKGDRGVFGEPGPKGEQGASGEEGEAGARGDLGDMGQPG
PKGSVGNPGEPGLRGPEGIRGLPGVEGPRGPPGPRGMQGDQGATGLPGIQGPPGRAPTDQHIKQVCMRVV
QEHFAEMAASLKRPDTGASGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEK
GERGPPGRGPKGLPGAIGLPGDPGPASYGKNGRDGEQGPPGVAGIPGVPGPPGPPGPPGFCEPASCTLQS
GQRAFSKGPDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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