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Report for CCDS35637.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35637.1 Public Mus musculus 1 Sp110 23 108 98 CCDS HistoryNCBI Gene:109032Re-query CCDS DB by CCDS ID:35637.1Re-query CCDS DB by GeneID:109032See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35637.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093508.6 ENSMUSP00000091226.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093508.6Link to Ensembl Protein Viewer:ENSMUSP00000091226.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000093508Re-query CCDS DB by Protein ID:ENSMUSP00000091226
Original member Current member NCBI NM_030194.1 NP_084470.1 Accepted alive Link to Nucleotide Sequence:NM_030194.1Link to Protein Sequence:NP_084470.1Re-query CCDS DB by Nucleotide ID:NM_030194Re-query CCDS DB by Protein ID:NP_084470Link to BLAST:NP_084470.1
Original member Current member NCBI NM_175397.4 NP_780606.3 Accepted alive Link to Nucleotide Sequence:NM_175397.4Link to Protein Sequence:NP_780606.3Re-query CCDS DB by Nucleotide ID:NM_175397Re-query CCDS DB by Protein ID:NP_780606Link to BLAST:NP_780606.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084470.1 445 Q8BVK9 445 100% 0 0
NP_780606.3 445 Q8BVK9 445 100% 0 0

Chromosomal Locations for CCDS 35637.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 85577292 85577345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85579057 85579199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85579644 85579745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85583512 85583580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85584903 85585052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85586215 85586295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85587462 85587539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85589114 85589191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85591523 85591789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85594265 85594433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85595962 85596108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGTTCACTCTGACCAAAGCCTTGGAAAAGGCTCTTCTCCAGCATTTCATATACATGAAGGTGAACATCG
CCTATGCCATCAACAAGCCATTCCCCTTCTTCGAAGCGCTCCGGGACAATTCCTTCATCACTGAGAGAAT
GTACAAGGAATCTCTGGAAGCCTGTCAAAATCTGGTCCCTCTGTCCAAAGTGGTGCACAATATTCTCACC
AGTCTGGAGCAGACTTTCCACCCGTCAGTGCTGCTGACGTTGTTCAGCAAGGTCAACCTCCGGGAATACC
CCAGCCTGGTGGCAATTTTCAGAAGCTTCAGAAACGTTGGTTATACCTACGAAGAGAAAAACAGACCCCC
ACTGACCCTGCTTGAAGACCTGGCCAACCCAGCAGAAGGGTGCTCCCTTCAGACACTGCTGCCACCACCC
CGACCCCAGATATCGCTGCCAAGTCATCTGTCCTCAGCACCGAGAGTCTGTGACCCCAGAGCAACCGCAC
AGCCAATCATTGAGATCCTGGATGAGCAGCCCAGTCCTTCTCCCCGAGCTGTGCCTCTCCTTGGCTGCAT
TCAGGAAGGAAAAACCACTCCAGTGTCCTCCAGAGATCACCAGAGAAAAGATAAGGAAGACTCTCGAGAG
ATGCCCCACAGTCCCTCAGGACCCGAGTCAGTGGTAAAAGATGACTCTCCAGCAGCAAATGACCTGGAAA
TGGCCAGGGAAGTACCCTGCACACCTGCAAACAAGAAAGCAAGAAGAAAAAAACGTCCGAACTGGTCAAA
TTCCAAAAGAAGACGGCAGAAAAAAAAGCCCCGTCAAGATGAGATGATGGGAGTGGCCTCACCTGGACAT
GGAGTTCAAGAGAAGCTCAAGGCAGTGAGCAGGAGGACTTTGTGGAAAGATGACTCATCTACGAACGTGA
AGGAGGTGACCAAGACACAGAGAACAAGGATGAGGCGTGCCCAGACATCCAATTCACAAGAGATCAGCAA
AGAGGCATCAAAAACAAGTGGTAGAAAGAGGCCCAGCACAGCACGAAGAACCACACAAGTTCCAGAGAAG
ACCAAGAATGACGCTGTGGATTTCTCTCCCACACTCCCTGTGACCTGTGGTAAGGCCAAAGGGACTTTGT
TCCAAGAGAAACTGAAGCAAGGAGCCTCAAAAAAGTGCATTCAGAATGAGGCAGGAGATTGGCTCACTGT
AAAGGAATTTTTAAATGAAGGGGGAAGGGCCACATCAAAAGACTGGAAGGGCGTTATACGTTGTAACGGG
GAGACATTAAGACATCTGGAGCAGAAAGGACTTTTGTTCTTTACCTCCAAGAGTAAACCTCAAAAGAAGG
GTGCCTAG

Translation (445 aa):
MFTLTKALEKALLQHFIYMKVNIAYAINKPFPFFEALRDNSFITERMYKESLEACQNLVPLSKVVHNILT
SLEQTFHPSVLLTLFSKVNLREYPSLVAIFRSFRNVGYTYEEKNRPPLTLLEDLANPAEGCSLQTLLPPP
RPQISLPSHLSSAPRVCDPRATAQPIIEILDEQPSPSPRAVPLLGCIQEGKTTPVSSRDHQRKDKEDSRE
MPHSPSGPESVVKDDSPAANDLEMAREVPCTPANKKARRKKRPNWSNSKRRRQKKKPRQDEMMGVASPGH
GVQEKLKAVSRRTLWKDDSSTNVKEVTKTQRTRMRRAQTSNSQEISKEASKTSGRKRPSTARRTTQVPEK
TKNDAVDFSPTLPVTCGKAKGTLFQEKLKQGASKKCIQNEAGDWLTVKEFLNEGGRATSKDWKGVIRCNG
ETLRHLEQKGLLFFTSKSKPQKKGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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