NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS35803.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35803.1 Public Mus musculus 1 Desi2 23 108 98 CCDS HistoryNCBI Gene:78825Re-query CCDS DB by CCDS ID:35803.1Re-query CCDS DB by GeneID:78825See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35803.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027783.13 ENSMUSP00000027783.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027783.13Link to Ensembl Protein Viewer:ENSMUSP00000027783.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027783Re-query CCDS DB by Protein ID:ENSMUSP00000027783
Original member Current member NCBI NM_024282.3 NP_077244.1 Accepted alive Link to Nucleotide Sequence:NM_024282.3Link to Protein Sequence:NP_077244.1Re-query CCDS DB by Nucleotide ID:NM_024282Re-query CCDS DB by Protein ID:NP_077244Link to BLAST:NP_077244.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077244.1 194 Q9D291 194 100% 0 0

Chromosomal Locations for CCDS 35803.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 178187916 178187957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178237912 178237984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178242612 178242705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178244341 178244482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178249235 178249468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGGGGGCTAACCAGTTAGTGGTGCTCAACGTCTACGACATGTACTGGATGAATGAATACACCTCATCTA
TTGGAATTGGAGTTTTTCATTCTGGAATTGAAGTATATGGCAGAGAGTTTGCTTATGGTGGCCATCCATA
TCCTTTTTCTGGAATATTTGAAATTTCCCCAGGAAATGCTTCTGAGCTAGGAGAAACATTTAAATTTAAA
GAAGCTGTTGTTCTAGGAAGTACGGACTTTCTAGAAGATGATATAGAGAAAATTGTAGAAGAACTGGGGA
AAGAGTATAAGGGCAACGCCTACCATCTGATGCACAAAAACTGCAATCACTTTTCTTCAGCTTTATCAGA
GATTCTCTGTGGGAAAGAGATTCCTCGCTGGATCAACCGGCTGGCCTACTTCAGCTCCTGTATACCCTTT
CTACAGAGTTGCCTGCCAAAGGAGTGGCTCACTCCTGCTGCACTTCAGTCTAGTGTCAGCCAAGAACTCC
AGGATGAACTAGAAGAAGCAGAGGATGCAGCCGCATCCAGTGCCATGGCAAGTGCTGCAGCTGGTGCCAG
AACTGGGCGTCACACTAAACTATAA

Translation (194 aa):
MGANQLVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFK
EAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPF
LQSCLPKEWLTPAALQSSVSQELQDELEEAEDAAASSAMASAAAGARTGRHTKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH