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Report for CCDS35892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35892.1 Public Mus musculus 10 Bend3 23 108 98 CCDS HistoryNCBI Gene:331623Re-query CCDS DB by CCDS ID:35892.1Re-query CCDS DB by GeneID:331623See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35892.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040147.7 ENSMUSP00000047251.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040147.7Link to Ensembl Protein Viewer:ENSMUSP00000047251.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000040147Re-query CCDS DB by Protein ID:ENSMUSP00000047251
Original member Current member EBI ENSMUST00000167488.8 ENSMUSP00000127351.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167488.8Link to Ensembl Protein Viewer:ENSMUSP00000127351.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167488Re-query CCDS DB by Protein ID:ENSMUSP00000127351
Original member Current member NCBI NM_001359600.1 NP_001346529.1 Accepted alive Link to Nucleotide Sequence:NM_001359600.1Link to Protein Sequence:NP_001346529.1Re-query CCDS DB by Nucleotide ID:NM_001359600Re-query CCDS DB by Protein ID:NP_001346529Link to BLAST:NP_001346529.1
Original member Current member NCBI NM_001359601.1 NP_001346530.1 Accepted alive Link to Nucleotide Sequence:NM_001359601.1Link to Protein Sequence:NP_001346530.1Re-query CCDS DB by Nucleotide ID:NM_001359601Re-query CCDS DB by Protein ID:NP_001346530Link to BLAST:NP_001346530.1
Original member Current member NCBI NM_199028.2 NP_950193.1 Accepted alive Link to Nucleotide Sequence:NM_199028.2Link to Protein Sequence:NP_950193.1Re-query CCDS DB by Nucleotide ID:NM_199028Re-query CCDS DB by Protein ID:NP_950193Link to BLAST:NP_950193.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346529.1 825 Q6PAL0 825 100% 0 0
NP_001346530.1 825 Q6PAL0 825 100% 0 0
NP_950193.1 825 Q6PAL0 825 100% 0 0

Chromosomal Locations for CCDS 35892.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 43493653 43493689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43494146 43494342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43509847 43512090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2478 nt):
ATGAACTCAACTGAAATCAGTGAAGATGTAGAAGAAGTTCTAAAAAATAACCCCGTGAAGGCAGAGGGCA
GCGACGCTACCTTGGACTGCTCCCGGAACTCCAGGGCCTCCGAGAAGCACCTTCTGGAGAGCGTCCTCAC
CGCCCTCCACGATTCCAGCAAGCGCAAGCAGCTGGACAGCGACGGCCAGCCAGACTCTGTCCCCAGTGTG
AAGAGGAGGCGGCTGATACCCGAGGCGCTCCTGGCCGGCATGCGCACCCGTGAGAACAGTTCGCCCTGCC
AGGGAAATGGAGAGCCTGCCAGCAGGGGCAGGAGTGGAAGCTGTGCATGGCCTGCAGAAGAGGAACCTTC
CACTGAGGCCACTGTCCCTTCCTACAAGAAGCCCCTGTATGGCATCTCCCACAAGATCATGGAGAAGAAG
AACCCTCCCTCGGGAGACCTGCTCAGCCCCTATGAGCTCTTTGAGAAGGCAAACTCCAGTAGCGGCCCTT
CTCCCCTGCGCCTGCTCAGTGAGTCTCAGAAGCGGGAATGTGGTGTCGGGGTTGCCACCGATGGGGACCT
CAACATCTACTTCCTGATCCAGAAGATGTTCTACATGCTCAATGGACTCACGACTAATATGTCCCAGCTT
CACAGCAAGATGGACCTGCTGTCCCTCGAGGTGAGCCGTGTCAAGAAGCAGGTGAGCCCTTCCGAGCTGG
TGGCCAAGTTCCAGCCCCCGCCCGAGTACCAGCTCACTGCTTCCGAGCTGAAACAAATCGCCGAGCAGAG
CCTGTCTTGCGGTGACCTAGCCTGTCGACTCCTTTTGCAGCTCTTCCCAGAGCTCTTCAGCGACGTGGAC
TTCTCCCGCGGCTGCAGTGCCTGTGGCTTTGCCGCCAAGCGGAAGTTAGAGTCGCTGCACCTGCAGCTCA
TCCGCAACTACGTAGAGGTCTACTACCCCAATGTGAAGGACACGGCTGTGTGGCAGGCCGAGTGCTTGCC
GCAGCTCAATGACTTCTTCAGCCGCTTCTGGGCCCAGAGAGAAATGGAAGACAGCCAGCCAGGCGGCCAG
GTCACCAACTTCTTCGAAGCAGACCAAGTGGATGCCGGCCACTTTCTGGACAACAAGGACCAAGAAGAAG
CTCTGTCTCTGGACCGCAGCAGCACCATTGCCTCAGACCACGTGGTGGACACTCAGGACCTCACCGAGTT
CCTAGATGAAGCCTCCTCTCCCGGTGAGTTTGCTGTGTTCCTGCTACACCGGCTCTTCCCGGAGCTGTTC
GACCACCGGAAGCTGGGCGAGCAGTACAGCTGCTATGGTGACGGGGGCAAGCAGGAGCTGGACCCCCAGA
GGCTGCAGATCATCCGCAACTACACAGAGATCTACTTCCCTGACATGCAGGAGGAGGAGGCTTGGCTGCA
GCAGTGTGCCCAGCGCATCAATGACGAGCTGGAGGGCCTGGGGCTGGAGGGAGGCAGCGAGGGTGAGGCA
CCGCGGGACGACTGCTATGACTCCTCTAGCCTGCCAGACGACATCTCGGTGGTCAAGGTAGAGGACAACT
TTGAAGGTGAGCGGCCTGGCCGGCGCTCCAAGAAGATCTGGCTGGTACCCATTGACTTTGACAAGTTGGA
GATCCCGCAGCCCGACTTCGAGATGCCAGGCTCAGACTGCCTTCTGAGCAAGGAGCAGCTGCGCAGCATC
TATGAGAGCAGCCTGTCCATTGGCAACTTCGCCTCCCGCCTGCTCGTGCACCTCTTCCCGGAGCTCTTCA
CCCACGAGAACCTGCGCAAGCAGTACAACTGCAGCGGCTCCCTGGGCAAGAAGCAGCTGGATCCGGCCCG
CATCAGGCTGATCCGCCACTACGTGCAGCTCCTCTACCCGAGAGCCAAGAACGACCGCGTGTGGACCCTG
GAGTTCGTAGGCAAGCTGGACGAGCGCTGTCGGCGCAGGGACACGGAGCAGCGCCGATCCTACCAGCAGC
AACGCAAGGTCCATGTGCCTGGCCCCGAGTGCCGGGACCTAGCAAGTTACGCAATCAACCCCGAGAGGTT
CCGTGAGGAGTTTGAGGGGCCCCCTCTGCCTCCTGAAAGGAGCAGCAAAGACTTTTGCAAAATACCCTTG
GACGAGCTGGTGGTCCCCTCACCTGACTTTCCGGTGCCTTCCCCCTACCTGCTGTCAGACAAGGAGGTTC
GTGAGATCGTGCAGCAGAGCCTGTCGGTGGGCAACTTCGCGGCCCGGCTCCTGGTCAGGCTCTTCCCGGA
ACTCTTCACGACCGAGAACCTCCGACTGCAGTACAACCACTCCGGGGCTTGTAACAAGAAGCAGCTGGAC
CCCACGAGGCTGAGGCTCATCCGCCATTACGTGGAAGCTGTCTACCCCGTGGAGAAGATGGAAGAGGTGT
GGCACTATGAATGTATACCTAGCATTGATGAGCGGTGTCGCCGTCCCAACAGGAAAAAGTGCGACATCCT
CAAGAAAGCCAAGAAAGTGGAGAAGTGA

Translation (825 aa):
MNSTEISEDVEEVLKNNPVKAEGSDATLDCSRNSRASEKHLLESVLTALHDSSKRKQLDSDGQPDSVPSV
KRRRLIPEALLAGMRTRENSSPCQGNGEPASRGRSGSCAWPAEEEPSTEATVPSYKKPLYGISHKIMEKK
NPPSGDLLSPYELFEKANSSSGPSPLRLLSESQKRECGVGVATDGDLNIYFLIQKMFYMLNGLTTNMSQL
HSKMDLLSLEVSRVKKQVSPSELVAKFQPPPEYQLTASELKQIAEQSLSCGDLACRLLLQLFPELFSDVD
FSRGCSACGFAAKRKLESLHLQLIRNYVEVYYPNVKDTAVWQAECLPQLNDFFSRFWAQREMEDSQPGGQ
VTNFFEADQVDAGHFLDNKDQEEALSLDRSSTIASDHVVDTQDLTEFLDEASSPGEFAVFLLHRLFPELF
DHRKLGEQYSCYGDGGKQELDPQRLQIIRNYTEIYFPDMQEEEAWLQQCAQRINDELEGLGLEGGSEGEA
PRDDCYDSSSLPDDISVVKVEDNFEGERPGRRSKKIWLVPIDFDKLEIPQPDFEMPGSDCLLSKEQLRSI
YESSLSIGNFASRLLVHLFPELFTHENLRKQYNCSGSLGKKQLDPARIRLIRHYVQLLYPRAKNDRVWTL
EFVGKLDERCRRRDTEQRRSYQQQRKVHVPGPECRDLASYAINPERFREEFEGPPLPPERSSKDFCKIPL
DELVVPSPDFPVPSPYLLSDKEVREIVQQSLSVGNFAARLLVRLFPELFTTENLRLQYNHSGACNKKQLD
PTRLRLIRHYVEAVYPVEKMEEVWHYECIPSIDERCRRPNRKKCDILKKAKKVEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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