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Report for CCDS35999.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35999.1 Public Mus musculus 10 Nfic 23 108 98 CCDS HistoryNCBI Gene:18029Re-query CCDS DB by CCDS ID:35999.1Re-query CCDS DB by GeneID:18029See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35999.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105321.9 ENSMUSP00000100958.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105321.9Link to Ensembl Protein Viewer:ENSMUSP00000100958.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000105321Re-query CCDS DB by Protein ID:ENSMUSP00000100958
Original member Current member NCBI NM_026756.2 NP_081032.2 Accepted alive Link to Nucleotide Sequence:NM_026756.2Link to Protein Sequence:NP_081032.2Re-query CCDS DB by Nucleotide ID:NM_026756Re-query CCDS DB by Protein ID:NP_081032Link to BLAST:NP_081032.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081032.2 428 P70255-3 428 100% 0 0

Chromosomal Locations for CCDS 35999.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 81401054 81401071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81404824 81405008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81406089 81406214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81407555 81407679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81408106 81408229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81408335 81408409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81409611 81409682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81420267 81420798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81427076 81427105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1287 nt):
ATGTATTCCTCCCCGCTCTGCCTGACCCAGGATGAGTTCCACCCGTTCATCGAGGCGCTGCTGCCGCATG
TGCGCGCCTTCGCCTACACCTGGTTCAACCTGCAGGCGCGCAAGCGCAAGTACTTCAAGAAGCACGAGAA
GCGCATGTCCAAGGACGAGGAGCGCGCGGTGAAGGATGAGCTGCTGGGTGAAAAGGCCGAAGTGAAGCAG
AAGTGGGCGTCGCGGCTGCTGGCCAAGCTGCGCAAGGACATCCGGCCCGAGTGCCGTGAAGACTTCGTAC
TGGCTGTGACTGGCAAGAAGGCGCCAGGCTGTGTGCTGTCCAACCCGGACCAGAAGGGCAAGATGCGGCG
CATCGACTGCCTGCGCCAGGCCGACAAAGTGTGGCGTCTGGACCTGGTCATGGTCATCCTGTTCAAGGGC
ATCCCACTGGAGAGCACAGATGGTGAGCGGCTGGTGAAGGCGGCTGCCTGTGCGCACCCGGTGCTGTGTG
TGCAGCCGCACCATATTGGCGTGGCCGTCAAGGAGCTGGACCTGTACCTGGCCTACTTTGTGCGGGAGCG
CGATGCGGAGCAGAGCAGCAGCCCCCGGACAGGTGTGGGCTCAGACCAGGAGGACAGCAAGCCCATAACG
CTGGACACCACAGACTTCCAGGAGAGCTTTGTCACGTCAGGTGTGTTCAGTGTCACGGAGCTGATCCAAG
TGTCTCGGACACCTGTGGTGACCGGAACCGGACCCAACTTCTCACTGGGAGAGCTGCAGGGTCACCTGGC
ATATGACCTGAACCCGGCCAGCGCCGGCATGAGAAGGACTCTACCCAGCACCTCCTCCAGTGGGAGCAAG
CGGCACAAGTCGGGCTCGATGGAAGAGGACGTGGACACGAGCCCCGGCGGCGACTACTACACGTCGCCCA
ACTCACCCACGAGTAGCAGCCGCAACTGGACGGAAGACATAGAAGGAGGCATCTCATCCCCGGTGAAGAA
GACAGAGATGGACAAATCTCCATTCAACAGCCCGTCCCCCCAGGACTCCCCCCGGCTCTCCAGCTTCACA
CAACACCACAGGCCGGTCATCGCGGTACACAGTGGCATCGCGCGGAGCCCCCACCCGACCTCGGCCCTGC
ACTTCCCTGCCACGCCCATCCTGCCACAGACAGCCTCCACCTACTTCCCCCATACGGCCATCCGGTACCC
GCCACATCTCAACCCCCAGGACCCGCTCAAGGATCTGGTGTCCCTGGCCTGTGACCCGGCCACCCAGCAG
CCTGGACCGTCCTGGTACCTGGGGTAG

Translation (428 aa):
MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKAEVKQ
KWASRLLAKLRKDIRPECREDFVLAVTGKKAPGCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKG
IPLESTDGERLVKAAACAHPVLCVQPHHIGVAVKELDLYLAYFVRERDAEQSSSPRTGVGSDQEDSKPIT
LDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTGPNFSLGELQGHLAYDLNPASAGMRRTLPSTSSSGSK
RHKSGSMEEDVDTSPGGDYYTSPNSPTSSSRNWTEDIEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFT
QHHRPVIAVHSGIARSPHPTSALHFPATPILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPATQQ
PGPSWYLG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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