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Report for CCDS36020.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36020.1 Public Mus musculus 10 Nt5dc3 23 108 98 CCDS HistoryNCBI Gene:103466Re-query CCDS DB by CCDS ID:36020.1Re-query CCDS DB by GeneID:103466See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36020.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099396.2 ENSMUSP00000096994.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099396.2Link to Ensembl Protein Viewer:ENSMUSP00000096994.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099396Re-query CCDS DB by Protein ID:ENSMUSP00000096994
Original member Current member NCBI NM_175331.3 NP_780540.2 Accepted alive Link to Nucleotide Sequence:NM_175331.3Link to Protein Sequence:NP_780540.2Re-query CCDS DB by Nucleotide ID:NM_175331Re-query CCDS DB by Protein ID:NP_780540Link to BLAST:NP_780540.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780540.2 546 Q3UHB1 546 100% 0 0

Chromosomal Locations for CCDS 36020.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 86779110 86779311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86804781 86804965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86811530 86811604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86812325 86812380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86815854 86815944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86816953 86817090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86820207 86820267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86820668 86820770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86820910 86821011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86823064 86823145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86824187 86824273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86825155 86825295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86831700 86831764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86833931 86834183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1641 nt):
ATGGCCACGGTGGCAGCGGCGGCCCGCGGGGCCGGGGCGAGGGCGGCGGCAGGGCTGCGGAGTTGCGGCG
GGGCCGTGGCTCGAGAACGACCGCGCTCGGGCTGCGCTCGGCGCCTGTGCTCTGCCCCGGCTGCCCCGGC
TGCCGTGGACATGAAAAGCTACCTGTGGGCGCGCTACCACGAGGCGAAGAGGAGCACGGACGAATTGGTT
CCATCCATCATGAACAACTTGCTGAATCCAGACGCCATTTTCTCGAACAATGAGATGAGCCTGTCAGACA
TCGAAATATATGGCTTTGATTATGATTACACCCTGGTATTCTATTCCAAGCACCTCCACACACTCATCTT
CAATGCTGCCCGGGACCTTCTCATCAACGAACACAGGTATCCTGTGGAAATCAGGAAGTATGAGTATGAC
CCAAGCTTTGCCATCCGGGGACTCCATTACGACGTCCAGCGGGCAGTGTTGATGAAGATCGATGCTTTTC
ATTACATCCAGATGGGGACAGTGTACAGAGGCCTCAGTGTTGTCCCTGATGAAGAAGTCATAGACATGTA
TGAGGGGTCCCACGTGCCCTTGGAGCAGATGAGTGACTTCTATGGAAAGAGTTCTCATGGGAACACCATG
AAGCAGTTCATGGATATCTTCTCGCTGCCCGAGATGACCCTGCTGTCCTGTGTGAACGAGCACTTCCTGA
AGAACAACATTGACTATGAACCTGTGCACCTGTACAAAGACGTCAAGGACTCCATAAGGGATGTCCACAT
CAAAGGGATAATGTACCGAGCAATCGAAGCGGATATTGAAAAGTACATCTGTTATGCTGATCAGACCCGT
GCAGTGTTGGCTAAACTGGCTGCCCACGGCAAGAAGATGTTCCTCATTACCAATAGCCCAAGTAGCTTTG
TAGACAAAGGGATGCGGTACATCGTGGGGAAGGACTGGCGAGACCTGTTCGATGTGGTCATAGTTCAGGC
CGAGAAACCCAACTTCTTCAATGACAAGCGGAGGCCTTTCCGAAAGGTGAATGAGAAAGGTGTCCTACTC
TGGGATAAAATCCACAAGCTGCAGAAAGGCCAGATTTACAAGCAGGGCAATTTGTATGAATTTTTGAAGC
TCACTGGATGGAGAGGATCCAAAGTACTGTATTTTGGTGACCACATCTACAGCGATCTGGCGGATCTGAC
CCTCAAGCACGGCTGGCGCACTGGAGCGATCATCCCCGAGCTCCGTTCCGAGCTCAGGATCATGAACACG
GAGCAGTACATCCAGACCATGACCTGGCTGCAGACCTTGACGGGGCTCCTGGAGCAGATGCAGGTCCACA
GAGACGCCGAGTCACAGCTGGTTTTACAGGAGTGGAAAAAGGAGAGGAAGGAGATGAGAGAAATGACCAA
AAGTTTCTTCAACGCCCAGTTTGGGAGCTTGTTCCGAACAGACCAGAATCCAACCTACTTCCTGAGGCGG
CTGTCGAGGTTCGCTGACATCTACATGGCGTCTCTGAGCTGCCTTCTGAACTACGACGTCCACCACACAT
TCTACCCCAGGAGGACTCCTCTGCAACATGAGCTCCCTGCATGGTCGGACAGCCCGTCTGCCTTCAAAGC
CCCTTTGCTGCAGGAGGCTCAGGCCAAGTAG

Translation (546 aa):
MATVAAAARGAGARAAAGLRSCGGAVARERPRSGCARRLCSAPAAPAAVDMKSYLWARYHEAKRSTDELV
PSIMNNLLNPDAIFSNNEMSLSDIEIYGFDYDYTLVFYSKHLHTLIFNAARDLLINEHRYPVEIRKYEYD
PSFAIRGLHYDVQRAVLMKIDAFHYIQMGTVYRGLSVVPDEEVIDMYEGSHVPLEQMSDFYGKSSHGNTM
KQFMDIFSLPEMTLLSCVNEHFLKNNIDYEPVHLYKDVKDSIRDVHIKGIMYRAIEADIEKYICYADQTR
AVLAKLAAHGKKMFLITNSPSSFVDKGMRYIVGKDWRDLFDVVIVQAEKPNFFNDKRRPFRKVNEKGVLL
WDKIHKLQKGQIYKQGNLYEFLKLTGWRGSKVLYFGDHIYSDLADLTLKHGWRTGAIIPELRSELRIMNT
EQYIQTMTWLQTLTGLLEQMQVHRDAESQLVLQEWKKERKEMREMTKSFFNAQFGSLFRTDQNPTYFLRR
LSRFADIYMASLSCLLNYDVHHTFYPRRTPLQHELPAWSDSPSAFKAPLLQEAQAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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