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Report for CCDS36138.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36138.1 Public Mus musculus 11 Trim41 23 108 98 CCDS HistoryNCBI Gene:211007Re-query CCDS DB by CCDS ID:36138.1Re-query CCDS DB by GeneID:211007See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36138.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047145.13 ENSMUSP00000037055.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047145.13Link to Ensembl Protein Viewer:ENSMUSP00000037055.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047145Re-query CCDS DB by Protein ID:ENSMUSP00000037055
Original member Current member NCBI NM_145377.2 NP_663352.2 Accepted alive Link to Nucleotide Sequence:NM_145377.2Link to Protein Sequence:NP_663352.2Re-query CCDS DB by Nucleotide ID:NM_145377Re-query CCDS DB by Protein ID:NP_663352Link to BLAST:NP_663352.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663352.2 630 Q5NCC3 630 100% 0 0

Chromosomal Locations for CCDS 36138.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 48807245 48807846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 48808125 48808252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 48808465 48808487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 48809050 48809280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 48812300 48812395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 48815843 48816655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1893 nt):
ATGGCTGCCGTTGCCATGACACCCAACCCTGTGCAGACCCTTCAGGAGGAGGCGGTGTGTGCCATCTGCC
TCGATTACTTCACGGACCCGGTGTCCATCGGCTGCGGGCACAACTTCTGCCGAGTGTGTGTAACCCAGTT
GTGGGGCGGGGAGGATGAGGAAGACAGAGATGAGTTGGATCGGGAGGAGGAGGAGGAGGAGGTCGGAGAG
GAGGAAGAAGTGGAGGCTGTCGGGGCTGGCGGGGGCTGGGACACCCCTATGCGGGAAGAAGATTATGAGG
GTGACATGGAGGAGGAGGCCGAGGAGGAAGAGGAAGTGTTCTGGAGTAGTGGTATAGGTGGGTCTAACTG
GGACAACATGGACTATGTGTGGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAACTGGACTATTACTTGGGG
GATGTGGCGGACCTGAGAGGGGAAGATGAGGACGAGGAGGAGGAAGTGCTGGAGGAAGACGAGGAAGAGG
AGCTAGACCCGATCACCCAACTGCCGCCACCTCCAGCCCCTCGGAGATGCTTCACTTGTCCCCAGTGTCG
AAAAAGTTTTCCTCGGCGGAGCTTCCGCCCCAACCTGCAGTTGGCCAACATGGTCCAGGTGATCCGTCAG
ATGCACCCAACTCCTGGGCGAGGGAGCCGTGTGAATGAACAAGGCATCTGTCCGAGACATCAAGAAGCCC
TGAAGCTGTTCTGTGAGGTGGATGAAGAAGCCATCTGTGTGGTGTGCCGCGAATCCAGGAGCCACAAACA
GCATAGTGTGGTGCCATTGGAGGAGGTAGTGCAGGAGTACAAGGCCAAGCTACAAGGGCATGTGGAACCA
CTTAGGAAGCATCTAGAGGCTGTGCAGAAGATGAAGGCCAAGGAGGAGAGGCGGGTGACAGAGCTGAAGA
GCCAGATGAAGTCAGAGCTGGCAGCTGTGGCCTCAGAGTTTGGGCGGCTAACAAGGTTTCTGGCTGAAGA
GCAGGCAGGATTAGAGAGGCGCCTCCGGGAGATGCACGAAGCTCAGTTAGGACGTGCGGGAGCAGCAGCC
AACCGCCTTGAAGAGCAGGCTGCCCAGCTGAGCCGCTTGCTTGCTGAAGCCCAAGAACGGAGCCAACAGG
GGGGCCTGCGGCTACTGCAAGACATCAAGGAGACTTTCAATAGGTGTGAAGAGATACAGTTGCAGCCCCC
AGAGATTTGGTCCCCTGACCCATGCCAACCCCATAGCCACGACTTCCTGACAGACGCCATCGTGAGGAAA
ATGAGCCGCATGTTTTGTCAGGCTGCAAGAGTGGACCTGACACTGGACCCTGACACAGCTCACCCAGCTC
TGCTGCTGTCCCCTGATCGCCGTGGAGTCCGCTTGGCAGAACGTCGGCAGGAGGTTCCTGAACATTCCAA
GCGCTTCTCAGCTGACTGCTGTGTACTAGGGGCCCAGGGCTTCCGCTCTGGCCGGCACTACTGGGAGGTA
GAGGTGGGTGGGAGGCGAGGCTGGGCAGTGGGTGCTGCCCGTGAATCAACCCATCATAAAGAAAAAGTGG
GCTCTGGGGGGTCCTCTGTTAGCAGTGGGGATGCCAGCTCCTCACGCCATCATCATCGCCGCCGCCGGCT
CCATCTGCCTCAGCAGCTCCTACTCCAGCGCGAAGTGTGGTGTGTGGGCACCCACGGCAAACGATACCAG
GCACAGAGCTCAACAGAGCAGACACTGCTCAGCCCATGTGAGAAACCACGGCGCTTTGGCGTATACCTGG
ACTATGAGGCTGGGCGCCTAGGCTTCTACAATGCGGATACCTTAGCCCATGTGCACACCTTCTCAGCTGC
CTTCCTTGGCGAGCGTGTTTTCCCTTTTTTCCGGGTACTTTCCAAGGGTACCCGAATCAAGCTCTGCCCT
TGA

Translation (630 aa):
MAAVAMTPNPVQTLQEEAVCAICLDYFTDPVSIGCGHNFCRVCVTQLWGGEDEEDRDELDREEEEEEVGE
EEEVEAVGAGGGWDTPMREEDYEGDMEEEAEEEEEVFWSSGIGGSNWDNMDYVWEEEEEEEEEELDYYLG
DVADLRGEDEDEEEEVLEEDEEEELDPITQLPPPPAPRRCFTCPQCRKSFPRRSFRPNLQLANMVQVIRQ
MHPTPGRGSRVNEQGICPRHQEALKLFCEVDEEAICVVCRESRSHKQHSVVPLEEVVQEYKAKLQGHVEP
LRKHLEAVQKMKAKEERRVTELKSQMKSELAAVASEFGRLTRFLAEEQAGLERRLREMHEAQLGRAGAAA
NRLEEQAAQLSRLLAEAQERSQQGGLRLLQDIKETFNRCEEIQLQPPEIWSPDPCQPHSHDFLTDAIVRK
MSRMFCQAARVDLTLDPDTAHPALLLSPDRRGVRLAERRQEVPEHSKRFSADCCVLGAQGFRSGRHYWEV
EVGGRRGWAVGAARESTHHKEKVGSGGSSVSSGDASSSRHHHRRRRLHLPQQLLLQREVWCVGTHGKRYQ
AQSSTEQTLLSPCEKPRRFGVYLDYEAGRLGFYNADTLAHVHTFSAAFLGERVFPFFRVLSKGTRIKLCP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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