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Report for CCDS36219.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36219.1 Public Mus musculus 11 Spata22 23 108 98 CCDS HistoryNCBI Gene:380709Re-query CCDS DB by CCDS ID:36219.1Re-query CCDS DB by GeneID:380709See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36219.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092926.10 ENSMUSP00000090602.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092926.10Link to Ensembl Protein Viewer:ENSMUSP00000090602.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000092926Re-query CCDS DB by Protein ID:ENSMUSP00000090602
Original member Current member NCBI NM_001045531.1 NP_001038996.1 Accepted alive Link to Nucleotide Sequence:NM_001045531.1Link to Protein Sequence:NP_001038996.1Re-query CCDS DB by Nucleotide ID:NM_001045531Re-query CCDS DB by Protein ID:NP_001038996Link to BLAST:NP_001038996.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001038996.1 358 Q5SV06 358 100% 0 0

Chromosomal Locations for CCDS 36219.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73331152 73331194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73333298 73333426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73336010 73336070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73336195 73336290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73340251 73340584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73343737 73343860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73344646 73344743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73345755 73345946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGAAGAGAAATCTAAATGAAAGTTCAGCCCGAAGTACAGCAGGCTGTTTGCCTGTGCCATTGTTCAATC
AGAAAAAGAGGAACAGACAGCCATTAACTTCTAATCCACTTCAGAATGATCCAGGTGTCAGTACTGTTTC
TGACAGTTACGGTTCCCCTTCTTTTCCAACAGATTGGGCGTGGGAAGCTGTGAATCCAGAGGTGGCTCCT
TTAAAGAAAACAGTGAATACAGGGCAAATACCAGCTTCTGCTTCTTATCCCTGGAGAAGTCAAGATTCTG
TGTCTAAATCTATTCAATCAAATGCTGAAAGAAGCCAAAGTGCCTGGGGCTACAGAGGCAACAACAGAAA
TACTAGCTTGAGAACTTGGGATTTTCGACCTCAGCATAAAACTGTAAGCCCTGCGGCAAACAGTGAGTTC
AGTTCTTGTCCAGTGAATTTGGGAGCTCAACAACAAAAACAGTTCCAAACACCTGAATTTCCTAACTTAC
CTGGACATAAAGAAGCTGAAGTACCCCGACAAACATGTTTATCAAAACTGCCTGGCTCTACAATGAAAGG
CCCAGACAGAGCCAGTGCACTGCAGGCATTTAAACCAAGTTTTCAACAAAATCCATTTAAGAAAACAGTG
TTGGGAGATATTCCAAGAGAAAATTCTCTGAAGGAAGGTACTTTGCATCAGTTAAAGGAAAAAGATAATT
CTTTAAGAATTATTTCTGCAGTTATTGAAAGTATGAAGTATTGGCGAGCACATGTGCAGAAAACTGTACT
TCTTTTTGAAATATTGGCTGTCCTGGATTCAGCTGTCACATCTGGCCCACATTATTCAAAGACTTTTCTT
ATGAGAGATGGGAAAAATATTCTTCCATGTGTATTTTATGAAATTGATCGTGAACTTCCAAGACTGATTA
GAGGCCGAGTTCACAGGTGTGTTGGACACTACGACCCAGACAAGAACATTTTCAAGTGTGTTTCTGTCAG
ACCAGCATCTGCTTCTGAACAAAAGACTTTCCAAGCATTTGTTACAATTGCAGATGCTGAGATGAAGTAT
CATACTAAAGTAACGAATGAAATGTAA

Translation (358 aa):
MKRNLNESSARSTAGCLPVPLFNQKKRNRQPLTSNPLQNDPGVSTVSDSYGSPSFPTDWAWEAVNPEVAP
LKKTVNTGQIPASASYPWRSQDSVSKSIQSNAERSQSAWGYRGNNRNTSLRTWDFRPQHKTVSPAANSEF
SSCPVNLGAQQQKQFQTPEFPNLPGHKEAEVPRQTCLSKLPGSTMKGPDRASALQAFKPSFQQNPFKKTV
LGDIPRENSLKEGTLHQLKEKDNSLRIISAVIESMKYWRAHVQKTVLLFEILAVLDSAVTSGPHYSKTFL
MRDGKNILPCVFYEIDRELPRLIRGRVHRCVGHYDPDKNIFKCVSVRPASASEQKTFQAFVTIADAEMKY
HTKVTNEM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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