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Report for CCDS36250.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36250.1 Public Mus musculus 11 Rad51d 23 108 98 CCDS HistoryNCBI Gene:19364Re-query CCDS DB by CCDS ID:36250.1Re-query CCDS DB by GeneID:19364See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36250.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018985.14 ENSMUSP00000018985.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018985.14Link to Ensembl Protein Viewer:ENSMUSP00000018985.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000018985Re-query CCDS DB by Protein ID:ENSMUSP00000018985
Original member Current member NCBI NM_011235.4 NP_035365.1 Accepted alive Link to Nucleotide Sequence:NM_011235.4Link to Protein Sequence:NP_035365.1Re-query CCDS DB by Nucleotide ID:NM_011235Re-query CCDS DB by Protein ID:NP_035365Link to BLAST:NP_035365.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035365.1 329 O55230-1 329 100% 0 0

Chromosomal Locations for CCDS 36250.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 82878940 82879023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82879185 82879352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82881601 82881671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82881771 82881861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82882887 82882982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82883493 82883627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82883883 82883964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82889692 82889810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82889970 82890031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82890338 82890419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGGGCATGCTCAGGGCAGGGCTGTGCCCGGGCCTCACCGAGGAGACCGTCCAGCTTCTCAGAGGCCGAA
AGATAAAAACAGTGGCAGACCTGGCAGCTGCTGACTTGGAGGAAGTAGCCCAGAAGTGTGGCTTGTCCTA
CAAGGCCCTCGTTGCCCTGAGGAGGGTGTTGCTGGCGCAGTTCTCGGCTTTCCCCTTAAATGGCGCAGAT
CTCTATGAGGAACTGAAGACTTCCACGGCCATCCTGTCCACCGGCATCGGAAGCCTGGACAAACTACTTG
ATGCTGGCCTCTATACTGGGGAGGTGACTGAAATTGTGGGTGGCCCAGGTAGCGGCAAAACCCAGGTGTG
TCTCTGTGTGGCTGCAAATGTGGCCCATAGCCTGCAGCAGAATGTACTGTATGTGGATTCCAATGGAGGA
ATGACGGCGTCCCGCCTCCTCCAGCTACTACAGGCTAGAACCCAAGATGAGGAGAAACAGGCAAGTGCTC
TCCAGAGGATACAGGTGGTGCGTTCATTTGACATCTTCCGGATGCTAGATATGCTACAGGACCTTCGCGG
CACCATAGCCCAGCAGGAAGCAACTTCTTCAGGCGCCGTGAAGGTTGTGATTGTGGACTCGGTCACTGCA
GTGGTCGCCCCACTTCTGGGAGGTCAGCAGAGGGAAGGCCTGGCCTTGATGATGCAGCTGGCCCGAGAGC
TCAAGATCCTGGCCCGGGACCTGGGTGTGGCAGTGGTGGTGACCAACCACTTGACTCGAGATTGGGATGG
TAGAAGATTCAAACCTGCCCTTGGACGCTCCTGGAGCTTTGTGCCCAGTACCCGGATTCTCCTGGATGTC
ACTGAGGGGGCTGGGACACTCGGTAGCAGCCAACGCACAGTATGTCTGACCAAGTCTCCCCGCCAGCCAA
CGGGTCTGCAGGAGATGATAGACATTGGGACATTGGGGACTGAGGAGCAGAGCCCAGAATTACCTGGCAA
GCAGACGTGA

Translation (329 aa):
MGMLRAGLCPGLTEETVQLLRGRKIKTVADLAAADLEEVAQKCGLSYKALVALRRVLLAQFSAFPLNGAD
LYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCVAANVAHSLQQNVLYVDSNGG
MTASRLLQLLQARTQDEEKQASALQRIQVVRSFDIFRMLDMLQDLRGTIAQQEATSSGAVKVVIVDSVTA
VVAPLLGGQQREGLALMMQLARELKILARDLGVAVVVTNHLTRDWDGRRFKPALGRSWSFVPSTRILLDV
TEGAGTLGSSQRTVCLTKSPRQPTGLQEMIDIGTLGTEEQSPELPGKQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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