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Report for CCDS36306.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36306.1 Public Mus musculus 11 Krt12 23 108 98 CCDS HistoryNCBI Gene:268482Re-query CCDS DB by CCDS ID:36306.1Re-query CCDS DB by GeneID:268482See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36306.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017741.3 ENSMUSP00000017741.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017741.3Link to Ensembl Protein Viewer:ENSMUSP00000017741.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000017741Re-query CCDS DB by Protein ID:ENSMUSP00000017741
Original member Current member NCBI NM_010661.2 NP_034791.2 Accepted alive Link to Nucleotide Sequence:NM_010661.2Link to Protein Sequence:NP_034791.2Re-query CCDS DB by Nucleotide ID:NM_010661Re-query CCDS DB by Protein ID:NP_034791Link to BLAST:NP_034791.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034791.2 487 Q64291-1 487 99.7947% 0 1

Chromosomal Locations for CCDS 36306.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 99416011 99416108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99416895 99416965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99417915 99418135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99418274 99418399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99418485 99418646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99419544 99419700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99420745 99420827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99421671 99422216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGTCGCTTTCAGTCTGCACCTCTGCGCTGTCCAGGAGGTCTTCCTCACAGAATGGGGCGGCAGGCAGAC
CTTGGGGTGCATCTGCTTCTAGTGTTGCCGGCGGCTATGGGGGATCGGCCTCTGGCTTTGGAGTTGGCTG
TGGAGGCCTCTTTTCTGCTGCTTCCATGTTTGGTTCTAGTTCTGGCTTTAGCGGTGGCTCTGCAGGTTGC
TTGCCGGGGCTTGGCTCTGCCTATGGGGGACCTCTGAGAGGTGGCGCGGGAGGAATGGGGATAGGGATGG
GGATAGCTGGAAGCTCGGGCGGTGGCTCTCTGTGTATCTTTTCTGGCAATGATGGAGGTCTTCTTTCTGG
TTCTGAGAAAGAAACCATGCAAAATCTAAATGACAGACTAGCTTCCTACCTGGGTAAGGTTCGCTCTCTA
GAGGAGGCTAATGCAGAACTGGAAAACAAAATTCGAGAGTGGTATGAAACACGGAGAACCAGAGACGCTG
GGTCTCAGAGTGATTACAGTAAATACTACCCACTGATTGAAGACTTGAAGAATAAGATCGTTTCTGCCAG
AGTCAGCAACGCCCAGCTCCTCCTGCAGATTGACAACGCAAGGCTGGCTGCCGAGGACTTCAGGATGAAG
TATGAGAATGAGCTGGCCCTGCGCCAGACCGTGGAGGCCGACATCAACGGGCTGCGAAGGGTGCTGGACG
AGCTGACCCTGACTAGAGCCGACCTGGAAGCCCAGCTTGAGACCCTCACTGAGGAGCTGGCTTACATGAA
GAAGAACCACGAAGAGGAACTCCAAAGTTTCCAGGCAGGTGGTCCAGGTGAGGTCAATGTAGAAATGGAC
GCGGCCCCTGGAGTGGATCTCACCAAGGTCCTCAATGAAATGAGAGCCCAGTATGAAGCCATGGCTGAGC
AAAATCGGAAAGATGCAGAGGCCTGGTTTCTTGAAAAGAGCAGAGAGCTCCGAAAAGAGATCAGCAGCAA
CACGGAGCAGCTTCAGTCCAGCAAGAGCGAGGTCACCGACCTGAAGCGCATGGTGCAGAACCTAGAGATT
GAACTCCAGTCCCAGCTCGCCATGAAGTCGTCCCTGGAAGGCTCGCTGGCTGAAACCGAGGGTGGGTACT
GCTGCCAACTGTCTCAGGTGCAGCAGCTGATCGGCAGCCTGGAGGAGCAACTCCAACAGGTGCGGGCTGA
CGCGGAGCGCCAGAATGCGGACCACCAGCGGCTGCTGGGCGTCAAGGCTCGCCTGGAGATGGAGATTGAG
ACCTACCGCCGGCTGCTGGAGGGGGACAGCCAAGGCGACGGTTTTGACGAGAGCTCATCCCTTTCTGTCT
CCAAACCGCAGACACCATCAGTCGATTCCTCTAAAGACCCAAATAAAACTCGAAAAATCAAGACAGTCGT
GCAGGAGATAGTGAATGGCGAAGTGGTCTCATCCCAGGTTCAGGAACTTGAAGAAGAGATGTAA

Translation (487 aa):
MSLSVCTSALSRRSSSQNGAAGRPWGASASSVAGGYGGSASGFGVGCGGLFSAASMFGSSSGFSGGSAGC
LPGLGSAYGGPLRGGAGGMGIGMGIAGSSGGGSLCIFSGNDGGLLSGSEKETMQNLNDRLASYLGKVRSL
EEANAELENKIREWYETRRTRDAGSQSDYSKYYPLIEDLKNKIVSARVSNAQLLLQIDNARLAAEDFRMK
YENELALRQTVEADINGLRRVLDELTLTRADLEAQLETLTEELAYMKKNHEEELQSFQAGGPGEVNVEMD
AAPGVDLTKVLNEMRAQYEAMAEQNRKDAEAWFLEKSRELRKEISSNTEQLQSSKSEVTDLKRMVQNLEI
ELQSQLAMKSSLEGSLAETEGGYCCQLSQVQQLIGSLEEQLQQVRADAERQNADHQRLLGVKARLEMEIE
TYRRLLEGDSQGDGFDESSSLSVSKPQTPSVDSSKDPNKTRKIKTVVQEIVNGEVVSSQVQELEEEM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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