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Report for CCDS36373.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36373.1 Public Mus musculus 11 Slc16a5 23 108 98 CCDS HistoryNCBI Gene:217316Re-query CCDS DB by CCDS ID:36373.1Re-query CCDS DB by GeneID:217316See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36373.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092445.11 ENSMUSP00000090102.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092445.11Link to Ensembl Protein Viewer:ENSMUSP00000090102.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000092445Re-query CCDS DB by Protein ID:ENSMUSP00000090102
Original member Current member NCBI NM_001080934.1 NP_001074403.1 Accepted alive Link to Nucleotide Sequence:NM_001080934.1Link to Protein Sequence:NP_001074403.1Re-query CCDS DB by Nucleotide ID:NM_001080934Re-query CCDS DB by Protein ID:NP_001074403Link to BLAST:NP_001074403.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074403.1 468 G5E8K6 468 100% 0 0

Chromosomal Locations for CCDS 36373.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115462609 115462807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115464914 115465057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115469336 115470148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115472671 115472921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGGCCCGGGCCCTGGAACAAGCAGATGGCAGATGGGCCTGGGTGGTCCTCCTATCCTCCCTGGTGACGC
AGGCCCTCACCCTGGGCTTCCCCACCTGCATCGGTGTCTTCTTCACTGATCTGCAGCGCGACTTTCAGGC
CAGCAACAGTGAGACCTCGTGGTTTCCTTCCATCCTGGGAGCCATGGTCCACGGTGGGGGACCCCTGTGC
AGCATCTTGGTCAAACATTTCGGCTGCCGAGTGACCATGATGCTGGGGGGTGTGCTGGCCAGCCTGGGCA
TGGTAGTCAGCACCTTCTCTGGCTCGCTCACCCACCTCTTCCTCACCGCAGGAGTGATCACAGGCCTGGG
CATGTGTTTCAGCTTCCAGTCGAGCATCACGGTAGTGGGCTTGTATTTTGTCCGCCGGCGGCCGCTAGCC
AATGCACTGGCCTCCATGGGACTCTCCATGGGCGTCACCCTCTGGCCACTGCTGGCCCGATATCTTCTGG
AAACCCTGGGCTGGAGGGGCGCCTTCCTCATCTTCGGTGGCATCTTACTCCACTGTTGTGTATGTGGAGC
CTTGCTGAGGCCTGTTGCCACCAACGAGGTCCCCGAGCCCAAAGAGGATCCCCTTCTACCTCCCAAGATA
CCTACACGCAGCTGCCTGGCAACATGTGTCTCAACCATTCGGTACCACCTGGCCTTTGACATCCTTCGGC
ACAATATGGGCTTCTGCATATACGTCACGGGCGTGACGTGGATGAACCTGGGTTTTGCACTGCCACATAT
CTTCCTAGTGCCGTACGCTATGCATCATGGGGTGGACGACTATTGGGCAGCCATGCTCATGTCCATTGTT
GGCTTCTGCAACATCTTCTTACGGCCAATGGCAGGGCTGCTGCTGGCAGGCAGGAAGAGCTTGGCTGCCT
ACCGGAAGTACCTGTTTGCTGTGGCGATCCTCATCAACGGGCTCACCAATCTAATATGCACGGTGTCAGC
CGACTTCCGGGTGCTCCTGGGCTATTGCCTGGTGTACAGCCTGTCCATGTGTGGAGTTGGGATCCTCGTC
TTCCAGGTTCTAATGGACATTGTCCCGATGGATCGGTTCCCCAGCGCCCTGGGCCTCTTCACCATCCTGT
GTGGCGTGACTTCTCTCATCTCTCCACCATTGGCTGGATTGCTGCTGGACAAGACCAACAACTTCAGCTA
CGTTTTCTATATGTCGAGTGGCTTCCTCGTCTCAGGCTCTCTTATCCTGGGTGTGGGCTTCTACGCCGCA
GAGAAGAAGAAGCTGAAGCAAGATGGGCAAGCCAAAATGGAGAACGCTACCTCAGAGATGACCCCAATGC
ACGATCTCACCTCAGAAGACAAGGACAGTGCCAAGAAGCAACCGTACCCTGAAAGCATCTATATGACCAA
TGTCTGA

Translation (468 aa):
MARALEQADGRWAWVVLLSSLVTQALTLGFPTCIGVFFTDLQRDFQASNSETSWFPSILGAMVHGGGPLC
SILVKHFGCRVTMMLGGVLASLGMVVSTFSGSLTHLFLTAGVITGLGMCFSFQSSITVVGLYFVRRRPLA
NALASMGLSMGVTLWPLLARYLLETLGWRGAFLIFGGILLHCCVCGALLRPVATNEVPEPKEDPLLPPKI
PTRSCLATCVSTIRYHLAFDILRHNMGFCIYVTGVTWMNLGFALPHIFLVPYAMHHGVDDYWAAMLMSIV
GFCNIFLRPMAGLLLAGRKSLAAYRKYLFAVAILINGLTNLICTVSADFRVLLGYCLVYSLSMCGVGILV
FQVLMDIVPMDRFPSALGLFTILCGVTSLISPPLAGLLLDKTNNFSYVFYMSSGFLVSGSLILGVGFYAA
EKKKLKQDGQAKMENATSEMTPMHDLTSEDKDSAKKQPYPESIYMTNV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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