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Report for CCDS36401.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36401.2 Public Mus musculus 12 Mfsd2b 23 108 98 CCDS HistoryNCBI Gene:432628Re-query CCDS DB by CCDS ID:36401.2Re-query CCDS DB by GeneID:432628See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 36401.1
The coding region has been updated to represent an alternate exon or splice site that is more supported by the available transcript and protein data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 36401.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045921.13 ENSMUSP00000045315.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045921.13Link to Ensembl Protein Viewer:ENSMUSP00000045315.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000045921Re-query CCDS DB by Protein ID:ENSMUSP00000045315
Original member Current member NCBI NM_001033488.2 NP_001028660.2 Accepted alive Link to Nucleotide Sequence:NM_001033488.2Link to Protein Sequence:NP_001028660.2Re-query CCDS DB by Nucleotide ID:NM_001033488Re-query CCDS DB by Protein ID:NP_001028660Link to BLAST:NP_001028660.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028660.2 494 Q3T9M1-1 494 99.7976% 0 1

Chromosomal Locations for CCDS 36401.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 4864055 4864079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4865137 4865313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4865728 4865871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4866159 4866268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4866449 4866529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4866790 4866873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4867338 4867459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4867612 4867702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4868913 4869043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4869132 4869210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4869535 4869658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4870499 4870623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4871376 4871501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4874271 4874336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1485 nt):
ATGTCGGTGCCCCATGGACCCACCCCCGCTCCTGTCGCAGAGCCTCACACCCAGGAGCCAGGCTCGGACA
AGAGAGATGGTCGCCTCTCAGTCTGTACAAAGGTGTGCTATGGCATTGGTGGGGTCCCCAACCAGGTGGC
CTCCAGCGCCTCAGCCTTCTACCTGCAACTCTTCCTACTGGATGTGGCCCAGATCCCCGCTGCCCAGGTG
TCACTTGCCTTGTTTGGAGGGAAGGTGTCTGGGGCAGTTGCAGACCCTGTGGCTGGCTTCTTCATCAACA
AGAGCAGAAGGACGGGGTCTGGACGGCTAATGCCTTGGGCGCTGGGCTGCATGCCCTTAATCGCACTGGC
CTACTTCTTCCTGTGGTTCCTGCCCCCATTCACCAGCCTTCGTGGGCTCTGGTATACCAGCTTCTACTGC
CTGTTCCAGGCCCTGGCTACGTTCTTCCAGGTGCCCTACACTGCGCTCACTATGATCCTCACCCCCAGCC
CCAGGGAGCGAGACTCTGCCACCGCATACCGGATGACCATGGAGATGGCAGGGACACTGATGGGAGCCAC
TGTCCACGGGCTCATTGTGTCCAGTGCCCACGGGTCCCAGAGGTGTGAGGACACTGTGCACCCCAGGAGT
CCTGCTGTTTCCCCAGATGTAGCTCGCCTCTATTGTATTGCAGCTGCCGTGGTTGCCTTGACTTATCCTG
TGTGTGGAAGTCTGCTGTGCCTAGGAGTGAAGGAGCAGCCAGATACTTCTGCCCCAGCCTCAGGCCAAGG
CCTGAACTTCTTCACTGGCCTGGCCATCACTTCCCAGCACCCACCCTACCTGAGCCTGGTGGTCTCTTTC
TTGTTCATTTCAGCTGCCGTCCAGGTGGAACAAAGTTACCTAGTCCTGTTCTGTACACACGCCTCTAAGC
TCCAAGATCATGTTCAGAACTTGGTGCTCATCATTCTGGTCTCAGCTGTGCTGAGCACCCCACTGTGGGA
GTGGGTTCTCCAGCGATTTGGGAAGAAGACATCTGCATTCGGCATCTGTGTGATGGTGCCCTTTTCTATC
TTGTTGGCTGCTGTGCCCTCAGCACCGGTGGCCTATGTTGTGGCCTTTGTCTCTGGCGTGAGCATTGCTG
TGTCCCTGCTGCTACCCTGGTCCATGCTGCCAGATGTGGTGGATGACTTTCAGCTGCAGCATCGGTGTGG
CCCAGGCGTGGAGACCATCTTCTACTCATCCTACGTCTTCTTCACCAAGCTGTCAGGCGCGGGTGCCTTG
GGCATCTCTACCCTCAGTTTGGAGTTTGCAGGGTATGAGGCAGGGGCCTGCCAGCAAGCAGAAGAAGTGG
TGGTCACTCTCAAGGTCCTCATCGGTGCTGTGCCCACCTGTATGATCCTTATTGGCCTGTGCATCCTCCT
GGTTGGCCCCACTCCCAAGATGCCACGTCAGGACACTTCCTCCCAGCTAAGCCTTCGGAGGAGGACTAGC
TACAGCCTTGCCTGA

Translation (494 aa):
MSVPHGPTPAPVAEPHTQEPGSDKRDGRLSVCTKVCYGIGGVPNQVASSASAFYLQLFLLDVAQIPAAQV
SLALFGGKVSGAVADPVAGFFINKSRRTGSGRLMPWALGCMPLIALAYFFLWFLPPFTSLRGLWYTSFYC
LFQALATFFQVPYTALTMILTPSPRERDSATAYRMTMEMAGTLMGATVHGLIVSSAHGSQRCEDTVHPRS
PAVSPDVARLYCIAAAVVALTYPVCGSLLCLGVKEQPDTSAPASGQGLNFFTGLAITSQHPPYLSLVVSF
LFISAAVQVEQSYLVLFCTHASKLQDHVQNLVLIILVSAVLSTPLWEWVLQRFGKKTSAFGICVMVPFSI
LLAAVPSAPVAYVVAFVSGVSIAVSLLLPWSMLPDVVDDFQLQHRCGPGVETIFYSSYVFFTKLSGAGAL
GISTLSLEFAGYEAGACQQAEEVVVTLKVLIGAVPTCMILIGLCILLVGPTPKMPRQDTSSQLSLRRRTS
YSLA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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